Click here to switch to the map view.

The map label for this gene is rseC

Identifier: 157162049

GI number: 157162049

Start: 2745658

End: 2746137

Strand: Reverse

Name: rseC

Synonym: EcHS_A2725

Alternate gene names: 157162049

Gene position: 2746137-2745658 (Counterclockwise)

Preceding gene: 157162050

Following gene: 157162048

Centisome position: 59.14

GC content: 54.79

Gene sequence:

>480_bases
ATGATCAAAGAGTGGGCTACCGTCGTCTCCTGGCAAAACGGGCAGGCGCTGGTCAGTTGTGATGTTAAAGCTTCATGCAG
CAGCTGCGCTTCACGCGCCGGTTGCGGTAGCCGCGTGTTAAATAAACTTGGCCCGCAAACCACGCATACCATTGTCGTAC
CCTGTGATGAGCCGTTAGTGCCGGGGCAAAAAGTGGAATTGGGGATCGCCGAAGGCAGCCTGCTTAGCTCCGCATTACTG
GTTTATATGTCGCCGCTGGTGGGATTATTCCTTATCGCTTCGCTATTTCAGCTACTCTTTGCTTCTGACGTCGCAGCATT
ATGTGGTGCGATCCTCGGTGGTATTGGCGGGTTCCTGATTGCGCGCGGCTACTCGCGTAAGTTTGCTGCCCGGGCAGAAT
GGCAACCGATCATCTTAAGCGTGGCATTGCCGCCTGGCCTTGTGCGATTTGAAACATCTTCGGAAGACGCGAGCCAGTGA

Upstream 100 bases:

>100_bases
GTACAAGCGTACGTGATAACGCCGAAATCACCATTGTCGGTGAACTGCCGCCGCAAACGGCGAAACGCATTGCCGAGAAT
ATTAAGTTCGGGGCAGCGCA

Downstream 100 bases:

>100_bases
TTTCACTGGCTTTGTTGCATTTTGCATAACAAATGCGAGGACGTTTCCAGATACCACAATCCATACGGTATGAACATTTC
CTCGCCTCAATGTTGTAGTG

Product: SoxR reducing system protein RseC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALL
VYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ

Sequences:

>Translated_159_residues
MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALL
VYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ
>Mature_159_residues
MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALL
VYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ

Specific function: Seems to modulate the activity of rpoE (sigma-E)

COG id: COG3086

COG function: function code T; Positive regulator of sigma E activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rseC family

Homologues:

Organism=Escherichia coli, GI1788923, Length=159, Percent_Identity=100, Blast_Score=317, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSEC_ECOLI (P46187)

Other databases:

- EMBL:   U37089
- EMBL:   U37455
- EMBL:   D64044
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   I83299
- RefSeq:   AP_003156.1
- RefSeq:   NP_417065.1
- ProteinModelPortal:   P46187
- STRING:   P46187
- EnsemblBacteria:   EBESCT00000004127
- EnsemblBacteria:   EBESCT00000004128
- EnsemblBacteria:   EBESCT00000004129
- EnsemblBacteria:   EBESCT00000017352
- GeneID:   947052
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2554
- KEGG:   eco:b2570
- EchoBASE:   EB2970
- EcoGene:   EG13178
- eggNOG:   COG3086
- GeneTree:   EBGT00050000010924
- HOGENOM:   HBG678543
- OMA:   GSAMLVY
- ProtClustDB:   PRK10862
- BioCyc:   EcoCyc:G7347-MONOMER
- Genevestigator:   P46187
- InterPro:   IPR007359

Pfam domain/function: PF04246 RseC_MucC

EC number: NA

Molecular weight: Translated: 16640; Mature: 16640

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x16279f78)-; HASH(0x1665ba88)-;

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV
CCCCHHHHEECCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCC
PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ
HCCCCHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCH
>Mature Secondary Structure
MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV
CCCCHHHHEECCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCC
PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ
HCCCCHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7889935; 9278503