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The map label for this gene is rarA [H]

Identifier: 154248687

GI number: 154248687

Start: 5295093

End: 5296403

Strand: Reverse

Name: rarA [H]

Synonym: Xaut_4770

Alternate gene names: 154248687

Gene position: 5296403-5295093 (Counterclockwise)

Preceding gene: 154248688

Following gene: 154248686

Centisome position: 99.76

GC content: 69.64

Gene sequence:

>1311_bases
ATGGCCGATCTGTTCGAGGCGGCGGGACTGGGCAGCGATGTGCCGCGCCCGCTCGCCGACCGGCTGCGGCCGGCCAAGCT
GTCCGAAGTGGTGGGCCAGGACCATCTGGTCGGGCCGGACGGCGTGCTCACCCGCATGCTGGAGACGCGCTCGCTCGGCT
CCCTCATCCTGTGGGGGCCGCCCGGCACGGGCAAGACCACGGTGGCGCGGCTGCTCGCTTCCGCCACCGACCTGCATTTC
GAGCAGATCTCGGCCATCTTCTCCGGCGTGGCCGACCTCAAGAAAGTGTTCGAGCAGGCCCGCGCCCGCCGTCTGGTGGG
CAAGGCGACGCTTCTGTTCGTGGACGAGATCCACCGCTTCAACCGTGCCCAGCAGGACAGCTTCCTGCCGGTGATGGAGG
ACGGCACCGTCACCCTGGTGGGCGCCACCACCGAGAACCCGTCCTTCGAGCTGAACGCCGCGCTGCTGTCCCGCGCCCGC
GTGCTGGTGTTCAAGTCGCTGGATGCGGACGCCATCGCCCGCCTGCTGACGCGGGCGGAGGAGGTGGAGGGCAAGGCCCT
GCCGCTCACCGAGGATGCCCGCTTCGCCCTGCTCAACATGGCGGACGGCGACGGGCGGGCCTCCCTCACCCTCGCGGAGG
AGGTATGGCGCGCGGCGCGGCCGGGGGAGGTGTTCGACGTGGCGGCGCTGGCCGACGTGGTGCAGCGCCGCGCGCCCATC
TACGACAAGAGCGAGGACGGCCACTACAACCTCATCTCCGCCCTGCACAAGGCGGTGCGCGGCTCGGATCCCGACGCGGC
GCTTTATTATTTCGCCCGCATGCTGGATGCCGGAGAGGCGCCCCTGTTCCTCGCCCGGCGCATTGTGCGCATGGCGGTGG
AGGACATCGGCAATGCCGATCCGCAGGCGCTTGTGGTCTGCAATGCGGCCAAGGACGCCTTCGACTTCCTCGGCTCGCCG
GAGGGGGAACTGGCCCTGGCGCAGGCGGTGGTCTACGTGGCCACCGCGCCCAAATCGAACGCGGTCTACAAGGCGTTCTC
GGCGGCCAAGCGGGCGGCCAAGGAGGGCGGCTCGCTGATGCCGCCTAAGCATATCCTCAACGCCCCCACCAAGCTGATGA
AGGGCGAGGGCTACGGCGCCGGCTATCGCTACGACCATGACCAGCCGGATGCCTTCTCCGGCCAGAACTATTTCCCCGAG
GCCCTCGGCCGGCAGAGCTTCTACCATCCGGTGGAGCGCGGCTTCGAGCGCGAGATCAGGAAGCGCATGGACTATTGGGC
GCGCCTGCGGGCCGAGCGCGGGGAACCGTGA

Upstream 100 bases:

>100_bases
TGAGTCGCCTTGGCTCTGCGCCCTGAGTGACCCTCGCCGCCGCCGGTCGCAGGCGGGGCGGGGGCTTGAAACCTGACCGA
GAGGACGAGAGACAACGCCC

Downstream 100 bases:

>100_bases
CGGCGCGCCGCCAATGCGCGGGGCGCCGCTCTGGCGTATGCTTGCCGGACACAGGAAGCCGGCCATGACCACGCTGATGC
GCCAACTCATCGAGAGGCTC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MADLFEAAGLGSDVPRPLADRLRPAKLSEVVGQDHLVGPDGVLTRMLETRSLGSLILWGPPGTGKTTVARLLASATDLHF
EQISAIFSGVADLKKVFEQARARRLVGKATLLFVDEIHRFNRAQQDSFLPVMEDGTVTLVGATTENPSFELNAALLSRAR
VLVFKSLDADAIARLLTRAEEVEGKALPLTEDARFALLNMADGDGRASLTLAEEVWRAARPGEVFDVAALADVVQRRAPI
YDKSEDGHYNLISALHKAVRGSDPDAALYYFARMLDAGEAPLFLARRIVRMAVEDIGNADPQALVVCNAAKDAFDFLGSP
EGELALAQAVVYVATAPKSNAVYKAFSAAKRAAKEGGSLMPPKHILNAPTKLMKGEGYGAGYRYDHDQPDAFSGQNYFPE
ALGRQSFYHPVERGFEREIRKRMDYWARLRAERGEP

Sequences:

>Translated_436_residues
MADLFEAAGLGSDVPRPLADRLRPAKLSEVVGQDHLVGPDGVLTRMLETRSLGSLILWGPPGTGKTTVARLLASATDLHF
EQISAIFSGVADLKKVFEQARARRLVGKATLLFVDEIHRFNRAQQDSFLPVMEDGTVTLVGATTENPSFELNAALLSRAR
VLVFKSLDADAIARLLTRAEEVEGKALPLTEDARFALLNMADGDGRASLTLAEEVWRAARPGEVFDVAALADVVQRRAPI
YDKSEDGHYNLISALHKAVRGSDPDAALYYFARMLDAGEAPLFLARRIVRMAVEDIGNADPQALVVCNAAKDAFDFLGSP
EGELALAQAVVYVATAPKSNAVYKAFSAAKRAAKEGGSLMPPKHILNAPTKLMKGEGYGAGYRYDHDQPDAFSGQNYFPE
ALGRQSFYHPVERGFEREIRKRMDYWARLRAERGEP
>Mature_435_residues
ADLFEAAGLGSDVPRPLADRLRPAKLSEVVGQDHLVGPDGVLTRMLETRSLGSLILWGPPGTGKTTVARLLASATDLHFE
QISAIFSGVADLKKVFEQARARRLVGKATLLFVDEIHRFNRAQQDSFLPVMEDGTVTLVGATTENPSFELNAALLSRARV
LVFKSLDADAIARLLTRAEEVEGKALPLTEDARFALLNMADGDGRASLTLAEEVWRAARPGEVFDVAALADVVQRRAPIY
DKSEDGHYNLISALHKAVRGSDPDAALYYFARMLDAGEAPLFLARRIVRMAVEDIGNADPQALVVCNAAKDAFDFLGSPE
GELALAQAVVYVATAPKSNAVYKAFSAAKRAAKEGGSLMPPKHILNAPTKLMKGEGYGAGYRYDHDQPDAFSGQNYFPEA
LGRQSFYHPVERGFEREIRKRMDYWARLRAERGEP

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=42.5968109339408, Blast_Score=323, Evalue=3e-88,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=38.496583143508, Blast_Score=267, Evalue=1e-71,
Organism=Homo sapiens, GI31563534, Length=204, Percent_Identity=28.921568627451, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787119, Length=422, Percent_Identity=47.8672985781991, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1788167, Length=256, Percent_Identity=28.515625, Blast_Score=62, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=434, Percent_Identity=38.0184331797235, Blast_Score=289, Evalue=7e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47583; Mature: 47451

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLFEAAGLGSDVPRPLADRLRPAKLSEVVGQDHLVGPDGVLTRMLETRSLGSLILWGP
CCCHHHHCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECC
PGTGKTTVARLLASATDLHFEQISAIFSGVADLKKVFEQARARRLVGKATLLFVDEIHRF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRAQQDSFLPVMEDGTVTLVGATTENPSFELNAALLSRARVLVFKSLDADAIARLLTRAE
CCCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHH
EVEGKALPLTEDARFALLNMADGDGRASLTLAEEVWRAARPGEVFDVAALADVVQRRAPI
HHCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
YDKSEDGHYNLISALHKAVRGSDPDAALYYFARMLDAGEAPLFLARRIVRMAVEDIGNAD
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
PQALVVCNAAKDAFDFLGSPEGELALAQAVVYVATAPKSNAVYKAFSAAKRAAKEGGSLM
CCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCC
PPKHILNAPTKLMKGEGYGAGYRYDHDQPDAFSGQNYFPEALGRQSFYHPVERGFEREIR
CCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHH
KRMDYWARLRAERGEP
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADLFEAAGLGSDVPRPLADRLRPAKLSEVVGQDHLVGPDGVLTRMLETRSLGSLILWGP
CCHHHHCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECC
PGTGKTTVARLLASATDLHFEQISAIFSGVADLKKVFEQARARRLVGKATLLFVDEIHRF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRAQQDSFLPVMEDGTVTLVGATTENPSFELNAALLSRARVLVFKSLDADAIARLLTRAE
CCCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHH
EVEGKALPLTEDARFALLNMADGDGRASLTLAEEVWRAARPGEVFDVAALADVVQRRAPI
HHCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
YDKSEDGHYNLISALHKAVRGSDPDAALYYFARMLDAGEAPLFLARRIVRMAVEDIGNAD
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
PQALVVCNAAKDAFDFLGSPEGELALAQAVVYVATAPKSNAVYKAFSAAKRAAKEGGSLM
CCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCC
PPKHILNAPTKLMKGEGYGAGYRYDHDQPDAFSGQNYFPEALGRQSFYHPVERGFEREIR
CCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHH
KRMDYWARLRAERGEP
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]