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The map label for this gene is omp2b [H]

Identifier: 154247746

GI number: 154247746

Start: 4240990

End: 4242456

Strand: Direct

Name: omp2b [H]

Synonym: Xaut_3823

Alternate gene names: 154247746

Gene position: 4240990-4242456 (Clockwise)

Preceding gene: 154247745

Following gene: 154247747

Centisome position: 79.88

GC content: 64.55

Gene sequence:

>1467_bases
ATGAAGATGGTGAAGAGCCTTCTCCTCGGCAGCGCGGCGGGTCTTGTCGCAGTCGCTGGAGCCCAGGCCGCCGATCTGCC
TGTCAAGGCGAAGGCAGTCGAATACGTGAAGGTCTGCTCCGCTTACGGCGCCGGCTACTACTACATCCCCGGCACCGACA
CCTGCATCAAGATCGGCGGCTACGCCCGCTTCGATACGTATGTGAACGCTGTCGGCACCTTCAACCCGGCGATCACCTCT
GCCGCCGGCACCATCTTCAACGGTCCGGGCGTGGGCAACTTTGCCTATCCCTTCAAGGACTCTGACGACAACGACTACCT
GACCCGCGTCCGCGGCACCATCGACTTCGATGCCCGCACCCAGACCGACTACGGCACCCTGCGCTCCTACGTGCGCTTCG
GCGCCGAGTGGAACTCGCAGACCGGCACCGGCGCTGTTTCCGGCTCGGGCATCTACTTCGAGCGCGCCTTCATCCAGTTC
TCCGGCTTCACGTTCGGTTACACCCAGTCGTTCTTCGACACGGGTCTGAACTACATGCTGACCACGCCGCTGTCGGGCTC
CAACACCTGGACCACCCTCGCGGCCTACACTGCCCAGTTCGGCAACGGCTTCTCCGCCACCCTGTCGCTGGAAGACGCCG
CCAACCGCACCACCGGTGTGCAGATGGCCGGCTCCACCACCCAGGCCATCATCGGTACCACCACCGTTGCGAGCGGCCTC
GGCTACACCAACTACCAGGCTGGCCAGCAGGCTCCTGACATCGTCGCCAACCTGCGCATCGACCAGGCTTGGGGTTCGGC
CCAGCTCTCTGGCGCCCTGCACCAGGTTCAGGTCACGCTTCCCGCTTACGCCGGCTACTATCCTGGCCTGACCTCCAGCG
ACTCCTGGGGCTGGGCCATCGGCGGCACTGTGGAGTTCAAGCTCCCCTTCCTCGCCGCGGGTGACAGCATCTTCTTCCAG
GCTGGCTACGAAGAAGGCGCCGCCAACTATCTCGGTCTGTCGGGCACCGCCCTGGGCCGTTCGACGGGCGTCGGCTCCAT
CAGCCTGAACCAGGTCGGCAGCTTCATCACTGCGACCGGCGCGTTCTACACCGTGGCTGACGCGGTGGCGACCGACCTCT
TCGGCGACACCTCGCTGACCAAGGGTTGGCAGATCCAGGGCCAGTTCCGTCACTACTGGACCCCCGGCCTGCGTTCCGCG
CTCTATGCCGGTTACCTGAAGTACGAGACCCCGGACAACATCGTCGCGGCGCTTGACTTCAACCTGTGGCAGGTTGGCGT
GAACACCGTGTGGTCGCCGGTGAAGAACCTCGATATCGGTGCTGAAGTGATCTACAGCAAGGTGGATGGCTCGGCTCCGC
TCGGTGCCTACGCCTCGACCAGCGCGTCTGGCAGCAACACCTACTCGCTCGTTGGCGGCTCCACCGACATCTGGTCGGGC
GGCGTGCGCGTGCAGCGTAACTTCTGA

Upstream 100 bases:

>100_bases
GTCTGAGGACGCAGTGGGAAATCGGGGCAAGAACCCTCTCGGGGTGCAGCCGCACCGGCGAAGCGGAACTCGCTCCCTCG
ATCAAACTTGGAGGTCTAAA

Downstream 100 bases:

>100_bases
TCCTCGCGCTTAGCGAAGATTTCCGAAAGGCCCCGGTGGGAAACCACCGGGGCTTTTCTTTGTCTTGATCTTTAATTCCG
TTAGGTAAGTAGTGGCAATT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MKMVKSLLLGSAAGLVAVAGAQAADLPVKAKAVEYVKVCSAYGAGYYYIPGTDTCIKIGGYARFDTYVNAVGTFNPAITS
AAGTIFNGPGVGNFAYPFKDSDDNDYLTRVRGTIDFDARTQTDYGTLRSYVRFGAEWNSQTGTGAVSGSGIYFERAFIQF
SGFTFGYTQSFFDTGLNYMLTTPLSGSNTWTTLAAYTAQFGNGFSATLSLEDAANRTTGVQMAGSTTQAIIGTTTVASGL
GYTNYQAGQQAPDIVANLRIDQAWGSAQLSGALHQVQVTLPAYAGYYPGLTSSDSWGWAIGGTVEFKLPFLAAGDSIFFQ
AGYEEGAANYLGLSGTALGRSTGVGSISLNQVGSFITATGAFYTVADAVATDLFGDTSLTKGWQIQGQFRHYWTPGLRSA
LYAGYLKYETPDNIVAALDFNLWQVGVNTVWSPVKNLDIGAEVIYSKVDGSAPLGAYASTSASGSNTYSLVGGSTDIWSG
GVRVQRNF

Sequences:

>Translated_488_residues
MKMVKSLLLGSAAGLVAVAGAQAADLPVKAKAVEYVKVCSAYGAGYYYIPGTDTCIKIGGYARFDTYVNAVGTFNPAITS
AAGTIFNGPGVGNFAYPFKDSDDNDYLTRVRGTIDFDARTQTDYGTLRSYVRFGAEWNSQTGTGAVSGSGIYFERAFIQF
SGFTFGYTQSFFDTGLNYMLTTPLSGSNTWTTLAAYTAQFGNGFSATLSLEDAANRTTGVQMAGSTTQAIIGTTTVASGL
GYTNYQAGQQAPDIVANLRIDQAWGSAQLSGALHQVQVTLPAYAGYYPGLTSSDSWGWAIGGTVEFKLPFLAAGDSIFFQ
AGYEEGAANYLGLSGTALGRSTGVGSISLNQVGSFITATGAFYTVADAVATDLFGDTSLTKGWQIQGQFRHYWTPGLRSA
LYAGYLKYETPDNIVAALDFNLWQVGVNTVWSPVKNLDIGAEVIYSKVDGSAPLGAYASTSASGSNTYSLVGGSTDIWSG
GVRVQRNF
>Mature_488_residues
MKMVKSLLLGSAAGLVAVAGAQAADLPVKAKAVEYVKVCSAYGAGYYYIPGTDTCIKIGGYARFDTYVNAVGTFNPAITS
AAGTIFNGPGVGNFAYPFKDSDDNDYLTRVRGTIDFDARTQTDYGTLRSYVRFGAEWNSQTGTGAVSGSGIYFERAFIQF
SGFTFGYTQSFFDTGLNYMLTTPLSGSNTWTTLAAYTAQFGNGFSATLSLEDAANRTTGVQMAGSTTQAIIGTTTVASGL
GYTNYQAGQQAPDIVANLRIDQAWGSAQLSGALHQVQVTLPAYAGYYPGLTSSDSWGWAIGGTVEFKLPFLAAGDSIFFQ
AGYEEGAANYLGLSGTALGRSTGVGSISLNQVGSFITATGAFYTVADAVATDLFGDTSLTKGWQIQGQFRHYWTPGLRSA
LYAGYLKYETPDNIVAALDFNLWQVGVNTVWSPVKNLDIGAEVIYSKVDGSAPLGAYASTSASGSNTYSLVGGSTDIWSG
GVRVQRNF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 51449; Mature: 51449

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMVKSLLLGSAAGLVAVAGAQAADLPVKAKAVEYVKVCSAYGAGYYYIPGTDTCIKIGG
CHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECC
YARFDTYVNAVGTFNPAITSAAGTIFNGPGVGNFAYPFKDSDDNDYLTRVRGTIDFDART
EEEHHHHHHHHCCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECEEEECCCC
QTDYGTLRSYVRFGAEWNSQTGTGAVSGSGIYFERAFIQFSGFTFGYTQSFFDTGLNYML
CCCHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEEEECCEEECCHHHHHHCCCCEEE
TTPLSGSNTWTTLAAYTAQFGNGFSATLSLEDAANRTTGVQMAGSTTQAIIGTTTVASGL
ECCCCCCCCEEHHHHHHHHHCCCEEEEEEEHHCCCCCCCEEECCCCCEEEEEHHHHHCCC
GYTNYQAGQQAPDIVANLRIDQAWGSAQLSGALHQVQVTLPAYAGYYPGLTSSDSWGWAI
CCCCCCCCCCCCCCEEEEEEECCCCCHHHCCCEEEEEEEECHHCCCCCCCCCCCCCCEEE
GGTVEFKLPFLAAGDSIFFQAGYEEGAANYLGLSGTALGRSTGVGSISLNQVGSFITATG
CCEEEEEEEEEECCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCEEEHHHHCCEEEECC
AFYTVADAVATDLFGDTSLTKGWQIQGQFRHYWTPGLRSALYAGYLKYETPDNIVAALDF
CHHHHHHHHHHHHCCCCCCCCCEEEEECEEEECCHHHHHHHHHCEEEECCCCCEEEEEEC
NLWQVGVNTVWSPVKNLDIGAEVIYSKVDGSAPLGAYASTSASGSNTYSLVGGSTDIWSG
CEEEECHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEECC
GVRVQRNF
CEEEEECC
>Mature Secondary Structure
MKMVKSLLLGSAAGLVAVAGAQAADLPVKAKAVEYVKVCSAYGAGYYYIPGTDTCIKIGG
CHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECC
YARFDTYVNAVGTFNPAITSAAGTIFNGPGVGNFAYPFKDSDDNDYLTRVRGTIDFDART
EEEHHHHHHHHCCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECEEEECCCC
QTDYGTLRSYVRFGAEWNSQTGTGAVSGSGIYFERAFIQFSGFTFGYTQSFFDTGLNYML
CCCHHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEEEEEECCEEECCHHHHHHCCCCEEE
TTPLSGSNTWTTLAAYTAQFGNGFSATLSLEDAANRTTGVQMAGSTTQAIIGTTTVASGL
ECCCCCCCCEEHHHHHHHHHCCCEEEEEEEHHCCCCCCCEEECCCCCEEEEEHHHHHCCC
GYTNYQAGQQAPDIVANLRIDQAWGSAQLSGALHQVQVTLPAYAGYYPGLTSSDSWGWAI
CCCCCCCCCCCCCCEEEEEEECCCCCHHHCCCEEEEEEEECHHCCCCCCCCCCCCCCEEE
GGTVEFKLPFLAAGDSIFFQAGYEEGAANYLGLSGTALGRSTGVGSISLNQVGSFITATG
CCEEEEEEEEEECCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCEEEHHHHCCEEEECC
AFYTVADAVATDLFGDTSLTKGWQIQGQFRHYWTPGLRSALYAGYLKYETPDNIVAALDF
CHHHHHHHHHHHHCCCCCCCCCEEEEECEEEECCHHHHHHHHHCEEEECCCCCEEEEEEC
NLWQVGVNTVWSPVKNLDIGAEVIYSKVDGSAPLGAYASTSASGSNTYSLVGGSTDIWSG
CEEEECHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEECC
GVRVQRNF
CEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]