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The map label for this gene is omp2b [H]

Identifier: 154247747

GI number: 154247747

Start: 4242874

End: 4244217

Strand: Direct

Name: omp2b [H]

Synonym: Xaut_3824

Alternate gene names: 154247747

Gene position: 4242874-4244217 (Clockwise)

Preceding gene: 154247746

Following gene: 154247748

Centisome position: 79.92

GC content: 65.33

Gene sequence:

>1344_bases
ATGTTGCGTTCCACGGCATTTGCCCAGCTCAGCCCCAACACTGGCGTCATCAGGACTGGCGTCATCAAGACTGGCGGCGC
GCGGGCGCCGCTCGCCGCTGCGCTGCTCGGGCTGGCCTCCATGGTGGGGACCGCGCCTGATGCGCGCGCGGCCGACCTTC
TCACCGTCAAGGCCAAGGACCCCTACATGCGCGCCTGCACCGCGCAGGGCGAGGGTTTCTATTACATTCCCGGCACCGAC
ACCTGCATTCGCGTGGGTGGCTATGCCTGGGCGGAAGGCTATTACAACACCTATACCCAGTATCCGGCGGAGAACGACAA
GAGCTATTCGGTGGCCACCGGCGGCCTCATCCTCGATGCCCGCACCGAGACCGACTACGGCACCCTGCGCTCCTATTTCG
AGACCAGGTTCCGCTGGCGCTCGTCGGACCCGTGGTCCGACGGCCCGAACAAGGCCGAGCTTGAGGTCTGGAACATCTAT
GTCCAGTTCGCCGGCTTCACCTTCGGCCACGCGCAGTCGTTCTTCGACTTCTACGCCAACGCCAACGTGCTGGGCACCGA
CCCGGCCACCATCGGCGACGACACCCGCATCAACCTCATCGCCTACACCTACGAGTTCACCAAGGGCCTGAGCGCCACGG
TGTCGTTCGAGGACGCGGCCGACCGCCAGAGCGGCACCCTGGCCGCCAATCCCGCCACCTTCTCCACCGACGACTACCTC
GCGGGGCAGAACGCCCCCGATGTGGTGGCGAACCTGAAGTATGAGGGCGAGTGGGGCTCCGCGCAGCTCTCCGGGGCGCT
CCATCAGGTCCGCGCGGTGTCGCTGCTGAACACCATCTCGGCCACGGATTCGAACTGGGGCTACGCGCTGCAGGCCGGCG
TCATGTTCAAGCTGCCGGCGCTGGGAGAAGAGGACACCCTCTATCTCCAGACCGCCTACACCGATGGGGCGACGGCCTAT
CTCGGCCTGCAGGATCCCTCGGGCAGCTATTCGCCGCCGGATGCCTTCCTGAGCCTCACCGGCCTCACCCGGGTGTCGGG
CTGGAACGTCACCGCCTCGCTCCTGCACAATTGGAACGAGAAGTGGAGCAGCGCCCTGTTCGGTGGCTATGCCGCCTACG
AGTTCAACGATGCCGAGGCGCAGTCCTTCTACGGCGCGTCGGGCGGCAAGAACTACAATGTGGGCGGCTATCTCGCCTTC
GCGCCGGTGAAGCATTTCAGCATCGCCCTGCAGTACGACTACACCTACAACTCGGCCGCGAACTATCTGCTCACGGATTA
TTCGCCGGCGCTGTCGTCGGTGTCCGCCAACCGCGTGCTGCTGTTCGTCTCGCGCGACTTCTAG

Upstream 100 bases:

>100_bases
GGACGCCGCACCCCGCGACAAAATGATCTGGCTCCTTACTTTCCCTTGCAGGGCATGGGGGGCGACGTTAAAGATACTTT
GTATCGTTATGGGGGACTCG

Downstream 100 bases:

>100_bases
AGCCGCAGCTCCTCCGCCGCGATCCAGGCGCGCCATCCTCCCGCCGGAGGGTGGCGCGTCTTGCGTTGCGGCAGCATGCC
GCCCGAGGGATCGGCCCTTC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MLRSTAFAQLSPNTGVIRTGVIKTGGARAPLAAALLGLASMVGTAPDARAADLLTVKAKDPYMRACTAQGEGFYYIPGTD
TCIRVGGYAWAEGYYNTYTQYPAENDKSYSVATGGLILDARTETDYGTLRSYFETRFRWRSSDPWSDGPNKAELEVWNIY
VQFAGFTFGHAQSFFDFYANANVLGTDPATIGDDTRINLIAYTYEFTKGLSATVSFEDAADRQSGTLAANPATFSTDDYL
AGQNAPDVVANLKYEGEWGSAQLSGALHQVRAVSLLNTISATDSNWGYALQAGVMFKLPALGEEDTLYLQTAYTDGATAY
LGLQDPSGSYSPPDAFLSLTGLTRVSGWNVTASLLHNWNEKWSSALFGGYAAYEFNDAEAQSFYGASGGKNYNVGGYLAF
APVKHFSIALQYDYTYNSAANYLLTDYSPALSSVSANRVLLFVSRDF

Sequences:

>Translated_447_residues
MLRSTAFAQLSPNTGVIRTGVIKTGGARAPLAAALLGLASMVGTAPDARAADLLTVKAKDPYMRACTAQGEGFYYIPGTD
TCIRVGGYAWAEGYYNTYTQYPAENDKSYSVATGGLILDARTETDYGTLRSYFETRFRWRSSDPWSDGPNKAELEVWNIY
VQFAGFTFGHAQSFFDFYANANVLGTDPATIGDDTRINLIAYTYEFTKGLSATVSFEDAADRQSGTLAANPATFSTDDYL
AGQNAPDVVANLKYEGEWGSAQLSGALHQVRAVSLLNTISATDSNWGYALQAGVMFKLPALGEEDTLYLQTAYTDGATAY
LGLQDPSGSYSPPDAFLSLTGLTRVSGWNVTASLLHNWNEKWSSALFGGYAAYEFNDAEAQSFYGASGGKNYNVGGYLAF
APVKHFSIALQYDYTYNSAANYLLTDYSPALSSVSANRVLLFVSRDF
>Mature_447_residues
MLRSTAFAQLSPNTGVIRTGVIKTGGARAPLAAALLGLASMVGTAPDARAADLLTVKAKDPYMRACTAQGEGFYYIPGTD
TCIRVGGYAWAEGYYNTYTQYPAENDKSYSVATGGLILDARTETDYGTLRSYFETRFRWRSSDPWSDGPNKAELEVWNIY
VQFAGFTFGHAQSFFDFYANANVLGTDPATIGDDTRINLIAYTYEFTKGLSATVSFEDAADRQSGTLAANPATFSTDDYL
AGQNAPDVVANLKYEGEWGSAQLSGALHQVRAVSLLNTISATDSNWGYALQAGVMFKLPALGEEDTLYLQTAYTDGATAY
LGLQDPSGSYSPPDAFLSLTGLTRVSGWNVTASLLHNWNEKWSSALFGGYAAYEFNDAEAQSFYGASGGKNYNVGGYLAF
APVKHFSIALQYDYTYNSAANYLLTDYSPALSSVSANRVLLFVSRDF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 48356; Mature: 48356

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSTAFAQLSPNTGVIRTGVIKTGGARAPLAAALLGLASMVGTAPDARAADLLTVKAKD
CCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
PYMRACTAQGEGFYYIPGTDTCIRVGGYAWAEGYYNTYTQYPAENDKSYSVATGGLILDA
CCEEEEECCCCEEEEECCCCCEEEECCEEEECCCCCCCCCCCCCCCCCEEEEECCEEEEE
RTETDYGTLRSYFETRFRWRSSDPWSDGPNKAELEVWNIYVQFAGFTFGHAQSFFDFYAN
CCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHCC
ANVLGTDPATIGDDTRINLIAYTYEFTKGLSATVSFEDAADRQSGTLAANPATFSTDDYL
CCEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCC
AGQNAPDVVANLKYEGEWGSAQLSGALHQVRAVSLLNTISATDSNWGYALQAGVMFKLPA
CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECC
LGEEDTLYLQTAYTDGATAYLGLQDPSGSYSPPDAFLSLTGLTRVSGWNVTASLLHNWNE
CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHEEEECCEEECCCCCHHHHHHHHHH
KWSSALFGGYAAYEFNDAEAQSFYGASGGKNYNVGGYLAFAPVKHFSIALQYDYTYNSAA
HHHHHHHCCEEEEEECCCHHHHEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCC
NYLLTDYSPALSSVSANRVLLFVSRDF
CEEEECCCHHHHCCCCCEEEEEEECCC
>Mature Secondary Structure
MLRSTAFAQLSPNTGVIRTGVIKTGGARAPLAAALLGLASMVGTAPDARAADLLTVKAKD
CCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
PYMRACTAQGEGFYYIPGTDTCIRVGGYAWAEGYYNTYTQYPAENDKSYSVATGGLILDA
CCEEEEECCCCEEEEECCCCCEEEECCEEEECCCCCCCCCCCCCCCCCEEEEECCEEEEE
RTETDYGTLRSYFETRFRWRSSDPWSDGPNKAELEVWNIYVQFAGFTFGHAQSFFDFYAN
CCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHCC
ANVLGTDPATIGDDTRINLIAYTYEFTKGLSATVSFEDAADRQSGTLAANPATFSTDDYL
CCEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCC
AGQNAPDVVANLKYEGEWGSAQLSGALHQVRAVSLLNTISATDSNWGYALQAGVMFKLPA
CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECC
LGEEDTLYLQTAYTDGATAYLGLQDPSGSYSPPDAFLSLTGLTRVSGWNVTASLLHNWNE
CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHEEEECCEEECCCCCHHHHHHHHHH
KWSSALFGGYAAYEFNDAEAQSFYGASGGKNYNVGGYLAFAPVKHFSIALQYDYTYNSAA
HHHHHHHCCEEEEEECCCHHHHEECCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCC
NYLLTDYSPALSSVSANRVLLFVSRDF
CEEEECCCHHHHCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]