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The map label for this gene is ytbD [H]

Identifier: 154246657

GI number: 154246657

Start: 3012512

End: 3013741

Strand: Reverse

Name: ytbD [H]

Synonym: Xaut_2718

Alternate gene names: 154246657

Gene position: 3013741-3012512 (Counterclockwise)

Preceding gene: 154246659

Following gene: 154246656

Centisome position: 56.77

GC content: 68.78

Gene sequence:

>1230_bases
ATGAGATCGTCATGCGATCTCTTCGGCGCGGGCTCTAAGGACATCGCCATGCCCCTTGCGCTCTATGCCCTCACCATCGC
CGCCTATGCCATCGGCACCACGGAATTCGTCATCGTCGGGCTGTTGCCGACAGTGGCCACCGACCTCGGCATCACCCTGC
CCATCGCCGGGCTGATCGTCAGCGTCTATGCGCTGGGCGTCACCTTCGGCGCGCCGGTGCTGACCGCGCTCACCGGCGGC
ATGGCGCGCAAGCCGCTGCTGCTCGGCCTGATGGCCCTGTTCATCGCCGGCAATACCGCGGCCGCGCTCAGCCCCACCTA
TGAATGGCTGCTGGTGGCGCGGGTGCTCTCCGCCTTCGCCCACGGCGTGTTCTTCTCGGTGGGCGCCACCATCGCCGCCG
ATCTGGTGCCGGAGAACCGCCGCGCCTCGGCCATCGCCCTCATGTTCATGGGGCTGACGGTGGCCATCGTCACCGGCGTG
CCGCTCGGCACCTTCATCGGCCAGAGCTTCGGCTGGCGCGCCACCTTCTGGGGCGTGGCGCTGCTGGGCATCATCGCTTT
TGCCGCCATCGCCCTGCTGCTGCCGTCCAACATCCGCAAGGCGCCCGCCGCCTCCCTGCTCGATCAGGTGCGGGTGCTGG
GCTCCGGCCGGCTGCTGCTGGTGTTCGGCATGACCGCGCTCGGCTATGGCGGCACCTTCGTGGCCTTCACCTATCTGGCC
GCCATCCTGGAGACCGTCACCGGCTTCGCCGCGGCGCAGGTGAGCCTCATCCTCATTCTCTACGGCCTTGCCATCGCGGT
GGGGAACCTCTCCGGCGGGCGCATCGCCGACCGCGATCCGGTGAGGGCGCTGACCATCCTGTTCACGCTTCAGGCGCTGG
TGCTGGTGGCCTTCTTCTTCACCGCGCCATCTCCGGTGCTTACGCTGGTGACGCTGGCGGCGCTCGGCTTCCTGTCGTTC
GCCAATGTGCCGGGGCTGCAGATCTATGTGGTGGAGCTGGCGAAGCGCTATCGTCCGGGGGCGGTGGATACCGCGTCCGC
CCTCAACATCGCGGCGTTCAACCTGGGCATTGCGCTTGGGGCCTGGATCGGCGGGCTGGCGGTATCCTCAAAGCTGGGCC
TCGGCGCCACGCCGGTGGTGGGCGCCCTCATGGTGGCCGGAGCGCTGGGGCTGACGGTTTGGAGCGCCGCATTGGACAAC
CGCGCCCGCGCTGTCGCCTGCCCCGTCTGA

Upstream 100 bases:

>100_bases
TGCCGGCTCCGGCGCCGGTTTCCATTGAGCCGCCGCCGGCTCCTGGAGCGCGATCCGATCGGATCGCGCTCTAACTCTAA
GAAAGAGACCGCGTTATCCG

Downstream 100 bases:

>100_bases
ACAAAGGAAACAGCATGCATAATGTGACCGCCAATGGCGCTGAGATCCCCGCCCTCGGCTTCGGCACCTTCCGCGTCTCG
GCGGCTGATACCCTGCGCAT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MRSSCDLFGAGSKDIAMPLALYALTIAAYAIGTTEFVIVGLLPTVATDLGITLPIAGLIVSVYALGVTFGAPVLTALTGG
MARKPLLLGLMALFIAGNTAAALSPTYEWLLVARVLSAFAHGVFFSVGATIAADLVPENRRASAIALMFMGLTVAIVTGV
PLGTFIGQSFGWRATFWGVALLGIIAFAAIALLLPSNIRKAPAASLLDQVRVLGSGRLLLVFGMTALGYGGTFVAFTYLA
AILETVTGFAAAQVSLILILYGLAIAVGNLSGGRIADRDPVRALTILFTLQALVLVAFFFTAPSPVLTLVTLAALGFLSF
ANVPGLQIYVVELAKRYRPGAVDTASALNIAAFNLGIALGAWIGGLAVSSKLGLGATPVVGALMVAGALGLTVWSAALDN
RARAVACPV

Sequences:

>Translated_409_residues
MRSSCDLFGAGSKDIAMPLALYALTIAAYAIGTTEFVIVGLLPTVATDLGITLPIAGLIVSVYALGVTFGAPVLTALTGG
MARKPLLLGLMALFIAGNTAAALSPTYEWLLVARVLSAFAHGVFFSVGATIAADLVPENRRASAIALMFMGLTVAIVTGV
PLGTFIGQSFGWRATFWGVALLGIIAFAAIALLLPSNIRKAPAASLLDQVRVLGSGRLLLVFGMTALGYGGTFVAFTYLA
AILETVTGFAAAQVSLILILYGLAIAVGNLSGGRIADRDPVRALTILFTLQALVLVAFFFTAPSPVLTLVTLAALGFLSF
ANVPGLQIYVVELAKRYRPGAVDTASALNIAAFNLGIALGAWIGGLAVSSKLGLGATPVVGALMVAGALGLTVWSAALDN
RARAVACPV
>Mature_409_residues
MRSSCDLFGAGSKDIAMPLALYALTIAAYAIGTTEFVIVGLLPTVATDLGITLPIAGLIVSVYALGVTFGAPVLTALTGG
MARKPLLLGLMALFIAGNTAAALSPTYEWLLVARVLSAFAHGVFFSVGATIAADLVPENRRASAIALMFMGLTVAIVTGV
PLGTFIGQSFGWRATFWGVALLGIIAFAAIALLLPSNIRKAPAASLLDQVRVLGSGRLLLVFGMTALGYGGTFVAFTYLA
AILETVTGFAAAQVSLILILYGLAIAVGNLSGGRIADRDPVRALTILFTLQALVLVAFFFTAPSPVLTLVTLAALGFLSF
ANVPGLQIYVVELAKRYRPGAVDTASALNIAAFNLGIALGAWIGGLAVSSKLGLGATPVVGALMVAGALGLTVWSAALDN
RARAVACPV

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=386, Percent_Identity=38.0829015544041, Blast_Score=211, Evalue=8e-56,
Organism=Escherichia coli, GI1786595, Length=358, Percent_Identity=33.2402234636872, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787808, Length=400, Percent_Identity=29.5, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI145693198, Length=381, Percent_Identity=27.0341207349081, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41800; Mature: 41800

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSCDLFGAGSKDIAMPLALYALTIAAYAIGTTEFVIVGLLPTVATDLGITLPIAGLIV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
SVYALGVTFGAPVLTALTGGMARKPLLLGLMALFIAGNTAAALSPTYEWLLVARVLSAFA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHH
HGVFFSVGATIAADLVPENRRASAIALMFMGLTVAIVTGVPLGTFIGQSFGWRATFWGVA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHH
LLGIIAFAAIALLLPSNIRKAPAASLLDQVRVLGSGRLLLVFGMTALGYGGTFVAFTYLA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHHHHHH
AILETVTGFAAAQVSLILILYGLAIAVGNLSGGRIADRDPVRALTILFTLQALVLVAFFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAPSPVLTLVTLAALGFLSFANVPGLQIYVVELAKRYRPGAVDTASALNIAAFNLGIALG
HCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AWIGGLAVSSKLGLGATPVVGALMVAGALGLTVWSAALDNRARAVACPV
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
>Mature Secondary Structure
MRSSCDLFGAGSKDIAMPLALYALTIAAYAIGTTEFVIVGLLPTVATDLGITLPIAGLIV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
SVYALGVTFGAPVLTALTGGMARKPLLLGLMALFIAGNTAAALSPTYEWLLVARVLSAFA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHH
HGVFFSVGATIAADLVPENRRASAIALMFMGLTVAIVTGVPLGTFIGQSFGWRATFWGVA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHH
LLGIIAFAAIALLLPSNIRKAPAASLLDQVRVLGSGRLLLVFGMTALGYGGTFVAFTYLA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHHHHHH
AILETVTGFAAAQVSLILILYGLAIAVGNLSGGRIADRDPVRALTILFTLQALVLVAFFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAPSPVLTLVTLAALGFLSFANVPGLQIYVVELAKRYRPGAVDTASALNIAAFNLGIALG
HCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AWIGGLAVSSKLGLGATPVVGALMVAGALGLTVWSAALDNRARAVACPV
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]