| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is cph1 [H]
Identifier: 154246385
GI number: 154246385
Start: 2730234
End: 2732399
Strand: Direct
Name: cph1 [H]
Synonym: Xaut_2444
Alternate gene names: 154246385
Gene position: 2730234-2732399 (Clockwise)
Preceding gene: 154246383
Following gene: 154246386
Centisome position: 51.43
GC content: 72.9
Gene sequence:
>2166_bases ATGGAAGACGCGACCTCCCGCCGCCCGGCCCGCTCCGATCTCGACCCTCTTACCGTGTGCGACCGCGAGCCGATCCACAG GCCGGGCGCCATCCAGCCCCACGGCCTGCTGCTGGTGGCCGATTCGCGCACCCTCAAGGTGGTCGCCGCGGCGGGCGACG TGGAGGGCCGGCTCGCCGCCGACTGGGCCGGGCGCGACCTCGGGGCGCTGCTCGGCCGCGACGTGGCCGCCCTGCTCGGC GCGGCGGCGGTGGGCACGGTGCGGGTCGGGCGGGTGGCGGGACGGGACGAGACCTTCGAGGTGCAGATCCATGCCTCCGG CCGGGGCCTGCTGGTGGAACTGGAGCCCGCCGGCGCGCCGCTGGCGGCCGCGGATATCCTCGCCGGTCTCGATGCCTCCG CCACCCGGTTCGAGCAGGCGCCCGACCTGCGCGCCCTGTGCGCGGAGGCGGCGCAGGCGTTCCGCCGGATCACCGGCTTC GACCGGGTGATGATCTACCAGTTCCGCGAGGACGAGGCCGGCGTGGTGCTGGCGGAGGCCAAGGCGCCGGAGATGGGCTC CTTCCTCAACCACCACTTCCCCGGCGGCGACGTGCCCCGGCAGGCGCGCGCGCTATATGTGCGCAACCGCGTGCGCGTCA TCCCCGACGTGGCCTACGTGCCCGCGCCGCTGCGGCCCGCCGCGACCGACGGCGCTGGGCCCGACTGGAGCGATCTGGAC ATGAGCGACCTCGGGCTGCGCTCGGTCTCGCCCATCCATGTGCAATATCTGAAGAACATGGGGGTGGGGGCCTCGGCCTC GGTGTCCATCGTGAAGGATGGGCAACTGTGGGGGCTGGTGGCCTGCCATCACCGCACGGCGCGGCTGTTGCCCTACGAGC TGCGCCTCGCCTGCCAGTCGCTGGCGGGCAACCTTGCCCGGCAGATCCGCGCCAAGGTGGACGCGGTACTCTATCGCGAG CGCATCCGGCTGCGCGCCGCCGAGGACGCGCTGGCCGACGCGCTCGCCGGTGACTTCGCGGTGGAGGACGTGCTCGACCG GCACGGCGACGACCTGTGCCGGGCGCTGAGCGCCGACGGCTTCGCCGCCGTGGCCGGGTCCATGCTCCTGACCAAGGGCC GCTGTCCGGATGAGGAAACCGTCCGGCGCATCGCGCAATGGGTGGAGACGCAGGCGCAGGTGCGCGCCTTCAGCACCCAC GCCCTGTCCGAGCACCTGCCCGCCGATTCCGGCGCGGTGGACGCGCGGGCGAGCGGGCTGCTCGCCCTGACCGTGCCGGG CGAAGAGCCGCTGGTCCTGCTGTGGTTCCGCGCTGAGCAGGTGGAGGTGGTGAACTGGGCCGGCAACCCGCACAAGGCCT CGTCCGCCGATCCGCAGGCGGAGCTGACGCCGCGCGCCTCCTTCGCGGCCTGGAGCGAGACCGTGCGCGGGCGGTCGCGC CGCTGGACGCTGGTGGAGACCGAGACCGCCCAGCGCCTCGCCCACACTTTGCTTCAGGCCCGCCAGCAGCGCCGGATCCG CGAGCTGAACCGCCAGCTCTCCGCCACCGTGGTCGAGAACGAGCGCCTGCTCCAGTACAAGGACCACCTCATGAACGAGG TGAACCACCGGGTGCAGAACAGCCTGCAACTGGTGGCCTCCTTCCTGCGGCTGCAGGCGCGGACCCTGGGCGACGCCCCC GCGCGCGACGCGCTCGCCGAGGCCGAGCGCCGCATCGCCGCCGTGGGCCTCGTCCACCGACAGCTCTATGGCGGCGAACA GGTGGAGACGGTGGACCTGTCGCGCTACCTCACGGACCTGTCGCACGAAGTCACCAATTCCCTCGGGGCTGAGTGGCGCG CGCACCTGATGCTCGACCTCGCGCCGGTGCTGATGGCCGCCGACCGCGCGGTGCGGCTCGGCCTCATCCTCACCGAGCTG GTGCTGAACACGGCCAAATATGCCTATCTGGGCGCGCCGGGGCCCCTGATCCTCGCCCTCGACCAGAACCGCGACCGCTT CCGGCTGGTGGTGGCCGACCGGGGCGCCGGCAAGACCGGAGCGCGGCAGGGCTTCGGCACCGTCATTCTCAACGCCATGG TCCAGAGCCTCAACGGCACGCTGGAGGACCTCGACAACGCCCCCGGCCTGCGCACCGTCGTCACCGCGCCGATCGGCATC GGCTAG
Upstream 100 bases:
>100_bases CGGTAGAGCCTCCGCTTGCCATGCCCGCCGGGCCCACCGAGCCGAAGGTCGATGCGTACGCCGTTCATGCCCTACCGCCA CCGATGCAAAGCCTGAGTTG
Downstream 100 bases:
>100_bases GGCCGCCGGGATGGATGCGGTGGATGCGCCCGCCCTCGGCCGCGCGGCCCGCCTGAAGGCGGAAACGGCGGCGGTCCATG GCCGGCTCGATGCCCGGATC
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]
Number of amino acids: Translated: 721; Mature: 721
Protein sequence:
>721_residues MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAADWAGRDLGALLGRDVAALLG AAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAPLAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGF DRVMIYQFREDEAGVVLAEAKAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQSLAGNLARQIRAKVDAVLYRE RIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADGFAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTH ALSEHLPADSGAVDARASGLLALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQNSLQLVASFLRLQARTLGDAP ARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDLSHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTEL VLNTAKYAYLGAPGPLILALDQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI G
Sequences:
>Translated_721_residues MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAADWAGRDLGALLGRDVAALLG AAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAPLAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGF DRVMIYQFREDEAGVVLAEAKAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQSLAGNLARQIRAKVDAVLYRE RIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADGFAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTH ALSEHLPADSGAVDARASGLLALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQNSLQLVASFLRLQARTLGDAP ARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDLSHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTEL VLNTAKYAYLGAPGPLILALDQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI G >Mature_721_residues MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAADWAGRDLGALLGRDVAALLG AAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAPLAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGF DRVMIYQFREDEAGVVLAEAKAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQSLAGNLARQIRAKVDAVLYRE RIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADGFAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTH ALSEHLPADSGAVDARASGLLALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQNSLQLVASFLRLQARTLGDAP ARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDLSHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTEL VLNTAKYAYLGAPGPLILALDQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI G
Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR000014 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 78020; Mature: 78020
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAA CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEE DWAGRDLGALLGRDVAALLGAAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAP CCCCCHHHHHHHHHHHHHHHHHHHHHEEECEECCCCCEEEEEEEECCCEEEEEECCCCCC LAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGFDRVMIYQFREDEAGVVLAEA HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEC KAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD CCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQS HHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCHHHHCHHHHHHHHHH LAGNLARQIRAKVDAVLYRERIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC FAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTHALSEHLPADSGAVDARASGL HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE LALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR EEEEECCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQN EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH SLQLVASFLRLQARTLGDAPARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH SHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTELVLNTAKYAYLGAPGPLILAL HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEE DQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI ECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCC G C >Mature Secondary Structure MEDATSRRPARSDLDPLTVCDREPIHRPGAIQPHGLLLVADSRTLKVVAAAGDVEGRLAA CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEE DWAGRDLGALLGRDVAALLGAAAVGTVRVGRVAGRDETFEVQIHASGRGLLVELEPAGAP CCCCCHHHHHHHHHHHHHHHHHHHHHEEECEECCCCCEEEEEEEECCCEEEEEECCCCCC LAAADILAGLDASATRFEQAPDLRALCAEAAQAFRRITGFDRVMIYQFREDEAGVVLAEA HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEC KAPEMGSFLNHHFPGGDVPRQARALYVRNRVRVIPDVAYVPAPLRPAATDGAGPDWSDLD CCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC MSDLGLRSVSPIHVQYLKNMGVGASASVSIVKDGQLWGLVACHHRTARLLPYELRLACQS HHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCHHHHCHHHHHHHHHH LAGNLARQIRAKVDAVLYRERIRLRAAEDALADALAGDFAVEDVLDRHGDDLCRALSADG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC FAAVAGSMLLTKGRCPDEETVRRIAQWVETQAQVRAFSTHALSEHLPADSGAVDARASGL HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE LALTVPGEEPLVLLWFRAEQVEVVNWAGNPHKASSADPQAELTPRASFAAWSETVRGRSR EEEEECCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC RWTLVETETAQRLAHTLLQARQQRRIRELNRQLSATVVENERLLQYKDHLMNEVNHRVQN EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH SLQLVASFLRLQARTLGDAPARDALAEAERRIAAVGLVHRQLYGGEQVETVDLSRYLTDL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH SHEVTNSLGAEWRAHLMLDLAPVLMAADRAVRLGLILTELVLNTAKYAYLGAPGPLILAL HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEE DQNRDRFRLVVADRGAGKTGARQGFGTVILNAMVQSLNGTLEDLDNAPGLRTVVTAPIGI ECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]