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The map label for this gene is ydiF [H]

Identifier: 154246366

GI number: 154246366

Start: 2708552

End: 2710174

Strand: Direct

Name: ydiF [H]

Synonym: Xaut_2425

Alternate gene names: 154246366

Gene position: 2708552-2710174 (Clockwise)

Preceding gene: 154246365

Following gene: 154246378

Centisome position: 51.02

GC content: 67.59

Gene sequence:

>1623_bases
ATGATACGCCTCGACAATATCGGCAAGCAGAACGGCAAGCAGATCGTCTTCATCGAAGCCTCGGCGGCGCTGCTGAAGGG
CGAGAAGATCGGCCTCGTCGGCCCCAACGGCGCCGGCAAGACCACGCTGTTCCGCATGATCACCGGCGAGGAGCCCCCGG
ACGAGGGGCAGGTGAGCGTCGATCGCGGCATCACCATCGGCTATTTCAGCCAGGACGTGGGCGAGATGGAAGGCCGCAGC
GCGCTGGCCGAGGTGATGGACGGCGCCGGCCCGGTGAGCGTCGTCGCCGCCGAGCTGAAGGAACTGGAGACGGCCATGGC
CGACCCCGAGCGCGCCGACGAGATGGACGCCATCATCGAGCGCTACGGCGAGGTGCAGGGCCGGTTCGAGGAACTGGGCG
GCTATGCGTTGGAGGGCCGTGCCGCCGAGGTGCTGGCCGGCCTCGGCTTCAGCCAGGAGATGATGGACGGCGACGTGGGC
AAGCTCTCCGGCGGCTGGAAGATGCGGGTGGCGCTGGCCCGCATCCTGCTCATGCGCCCCGACGTGATGCTGCTGGACGA
GCCCTCCAACCATCTCGACATCGAGAGCCTGATCTGGCTGGAAGCCTTCCTGAAGGGCTTCGACGGCGCGCTGATGATGA
CCTCCCACGATCGGGCCTTCATGAACCGCATCGTCACCAAGATCGTGGAGATCGACGCCGGTGCCCTCACCACCTATTCG
GGCGACTATGAGTTCTACGCTCAGCAGCGGGCGCTGAACGAGAAGCAGCAGCAGGCCCAGTTCGAGCGCCAGCAGGCCAT
GCTGGCCAAGGAGATCCAGTTCATCGAGCGGTTCAAGGCCCGCGCCTCCCATGCCGCGCAGGTGCAGAGCCGGGTCAAGA
AGCTGGACAAGATCGACCGGGTGGAGCCGCCCCGCCGCCGCGAGAGCGTGTCGTTCGAGTTCCAGCCGGCGCCGCGCTCC
GGCGAGGACGTGGCGAGCCTGAAGGGCGTGCACAAGAGCTATGGCAGCCGCACCATCTATGAGGGGCTGGATTTCCACGT
GCGCCGCCGCGAGCGCTGGTGCGTCATGGGCGTCAACGGCGCCGGCAAGTCCACCCTGCTGAAGCTGGTGACGGGCGCCA
CGGAGCCGGACGCCGGCACGGTGGCGGTGGGCGGCAGCGTGAAGATGGCCTATTTCGCCCAGCACGCCATGGAGGTGCTG
GACGGCGAGCGCACCGTGTTCGAGACCCTGGAAGATTCATTCCCCCAGGCCGGGCAGGGTGCCCTGCGGGCGCTGGCCGG
CTGCTTCGGCTTCTCGGGCGACGATGCCGACAAGCGCTGCCGGGTGCTGTCGGGCGGCGAGAAAGCCCGCCTCGCCATGG
CGCGGATGCTGTACGATCCGCCCAACTTCCTGGTGCTGGACGAGCCCACCAACCATCTCGACATCGCCACCAAGGAAATG
CTCATCGCCGCGCTGGCGGACTACGAGGGCACCATGCTGTTCGTCTCGCACGACCGGCACTTCCTCGCCGCCTTGTCCAA
CCGGGTGCTGGAGCTGACCCCCGACGGCATCCACCAATATGGCGGCGGCTACACCGAATATGTGGCCCGCACCGGCCAGG
AAGCCCCCGGCCTGCGGAGCTGA

Upstream 100 bases:

>100_bases
GGGCTTGCGAGGAGCTGCCATGGCCTGCGCGCCCTTTCCCGCGGGCGCCTGATGGCCTATTTGCGCGCACAAGCTCCCCA
TCTCCCCGAGATCCCCGCGC

Downstream 100 bases:

>100_bases
CGCCGCGGACCGTCATGGCCGGGCTTGTCCCGGAAGTCGGCTGTTGCCGACTTCCGACTCTGAGAGCGGAACCCGCAAAC
ATGCGGGTTCCGGCCATCCA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MIRLDNIGKQNGKQIVFIEASAALLKGEKIGLVGPNGAGKTTLFRMITGEEPPDEGQVSVDRGITIGYFSQDVGEMEGRS
ALAEVMDGAGPVSVVAAELKELETAMADPERADEMDAIIERYGEVQGRFEELGGYALEGRAAEVLAGLGFSQEMMDGDVG
KLSGGWKMRVALARILLMRPDVMLLDEPSNHLDIESLIWLEAFLKGFDGALMMTSHDRAFMNRIVTKIVEIDAGALTTYS
GDYEFYAQQRALNEKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLDKIDRVEPPRRRESVSFEFQPAPRS
GEDVASLKGVHKSYGSRTIYEGLDFHVRRRERWCVMGVNGAGKSTLLKLVTGATEPDAGTVAVGGSVKMAYFAQHAMEVL
DGERTVFETLEDSFPQAGQGALRALAGCFGFSGDDADKRCRVLSGGEKARLAMARMLYDPPNFLVLDEPTNHLDIATKEM
LIAALADYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRS

Sequences:

>Translated_540_residues
MIRLDNIGKQNGKQIVFIEASAALLKGEKIGLVGPNGAGKTTLFRMITGEEPPDEGQVSVDRGITIGYFSQDVGEMEGRS
ALAEVMDGAGPVSVVAAELKELETAMADPERADEMDAIIERYGEVQGRFEELGGYALEGRAAEVLAGLGFSQEMMDGDVG
KLSGGWKMRVALARILLMRPDVMLLDEPSNHLDIESLIWLEAFLKGFDGALMMTSHDRAFMNRIVTKIVEIDAGALTTYS
GDYEFYAQQRALNEKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLDKIDRVEPPRRRESVSFEFQPAPRS
GEDVASLKGVHKSYGSRTIYEGLDFHVRRRERWCVMGVNGAGKSTLLKLVTGATEPDAGTVAVGGSVKMAYFAQHAMEVL
DGERTVFETLEDSFPQAGQGALRALAGCFGFSGDDADKRCRVLSGGEKARLAMARMLYDPPNFLVLDEPTNHLDIATKEM
LIAALADYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRS
>Mature_540_residues
MIRLDNIGKQNGKQIVFIEASAALLKGEKIGLVGPNGAGKTTLFRMITGEEPPDEGQVSVDRGITIGYFSQDVGEMEGRS
ALAEVMDGAGPVSVVAAELKELETAMADPERADEMDAIIERYGEVQGRFEELGGYALEGRAAEVLAGLGFSQEMMDGDVG
KLSGGWKMRVALARILLMRPDVMLLDEPSNHLDIESLIWLEAFLKGFDGALMMTSHDRAFMNRIVTKIVEIDAGALTTYS
GDYEFYAQQRALNEKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLDKIDRVEPPRRRESVSFEFQPAPRS
GEDVASLKGVHKSYGSRTIYEGLDFHVRRRERWCVMGVNGAGKSTLLKLVTGATEPDAGTVAVGGSVKMAYFAQHAMEVL
DGERTVFETLEDSFPQAGQGALRALAGCFGFSGDDADKRCRVLSGGEKARLAMARMLYDPPNFLVLDEPTNHLDIATKEM
LIAALADYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRS

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=533, Percent_Identity=34.8968105065666, Blast_Score=298, Evalue=6e-81,
Organism=Homo sapiens, GI27881506, Length=539, Percent_Identity=33.2096474953618, Blast_Score=258, Evalue=9e-69,
Organism=Homo sapiens, GI10947137, Length=539, Percent_Identity=33.2096474953618, Blast_Score=258, Evalue=1e-68,
Organism=Homo sapiens, GI69354671, Length=528, Percent_Identity=32.9545454545455, Blast_Score=231, Evalue=2e-60,
Organism=Homo sapiens, GI10947135, Length=528, Percent_Identity=33.1439393939394, Blast_Score=231, Evalue=2e-60,
Organism=Escherichia coli, GI1789751, Length=527, Percent_Identity=35.2941176470588, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1787041, Length=537, Percent_Identity=34.6368715083799, Blast_Score=332, Evalue=4e-92,
Organism=Escherichia coli, GI2367384, Length=528, Percent_Identity=33.7121212121212, Blast_Score=288, Evalue=9e-79,
Organism=Escherichia coli, GI1787182, Length=519, Percent_Identity=34.8747591522158, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI1788165, Length=220, Percent_Identity=29.0909090909091, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=26.8867924528302, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI48995001, Length=534, Percent_Identity=22.2846441947566, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1789873, Length=230, Percent_Identity=30, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787164, Length=193, Percent_Identity=34.1968911917098, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788225, Length=212, Percent_Identity=29.2452830188679, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788897, Length=204, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=24, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787792, Length=221, Percent_Identity=26.6968325791855, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786698, Length=204, Percent_Identity=27.9411764705882, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789962, Length=196, Percent_Identity=25, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1787112, Length=233, Percent_Identity=30.0429184549356, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=535, Percent_Identity=34.5794392523364, Blast_Score=289, Evalue=2e-78,
Organism=Caenorhabditis elegans, GI17559834, Length=547, Percent_Identity=31.4442413162706, Blast_Score=282, Evalue=4e-76,
Organism=Caenorhabditis elegans, GI17555318, Length=519, Percent_Identity=31.2138728323699, Blast_Score=254, Evalue=6e-68,
Organism=Caenorhabditis elegans, GI71983510, Length=258, Percent_Identity=26.7441860465116, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=258, Percent_Identity=26.7441860465116, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=284, Percent_Identity=26.056338028169, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=220, Percent_Identity=28.1818181818182, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=539, Percent_Identity=30.0556586270872, Blast_Score=273, Evalue=7e-74,
Organism=Saccharomyces cerevisiae, GI6320874, Length=543, Percent_Identity=31.6758747697974, Blast_Score=270, Evalue=6e-73,
Organism=Saccharomyces cerevisiae, GI6324314, Length=386, Percent_Identity=27.2020725388601, Blast_Score=127, Evalue=7e-30,
Organism=Saccharomyces cerevisiae, GI6323278, Length=387, Percent_Identity=25.8397932816537, Blast_Score=120, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6325030, Length=285, Percent_Identity=30.5263157894737, Blast_Score=118, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24666836, Length=530, Percent_Identity=33.0188679245283, Blast_Score=297, Evalue=2e-80,
Organism=Drosophila melanogaster, GI24642252, Length=508, Percent_Identity=31.6929133858268, Blast_Score=265, Evalue=6e-71,
Organism=Drosophila melanogaster, GI18859989, Length=508, Percent_Identity=31.6929133858268, Blast_Score=265, Evalue=6e-71,
Organism=Drosophila melanogaster, GI24641342, Length=552, Percent_Identity=30.0724637681159, Blast_Score=257, Evalue=1e-68,
Organism=Drosophila melanogaster, GI221500365, Length=184, Percent_Identity=29.8913043478261, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007184, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59250; Mature: 59250

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLDNIGKQNGKQIVFIEASAALLKGEKIGLVGPNGAGKTTLFRMITGEEPPDEGQVSV
CCCCCCCCCCCCCEEEEEECCHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEE
DRGITIGYFSQDVGEMEGRSALAEVMDGAGPVSVVAAELKELETAMADPERADEMDAIIE
CCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RYGEVQGRFEELGGYALEGRAAEVLAGLGFSQEMMDGDVGKLSGGWKMRVALARILLMRP
HHHHHHHHHHHHCCEEECCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
DVMLLDEPSNHLDIESLIWLEAFLKGFDGALMMTSHDRAFMNRIVTKIVEIDAGALTTYS
CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEC
GDYEFYAQQRALNEKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLDKIDR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VEPPRRRESVSFEFQPAPRSGEDVASLKGVHKSYGSRTIYEGLDFHVRRRERWCVMGVNG
CCCCCHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCHHCCCHHHEECCCCEEEEECCC
AGKSTLLKLVTGATEPDAGTVAVGGSVKMAYFAQHAMEVLDGERTVFETLEDSFPQAGQG
CCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHH
ALRALAGCFGFSGDDADKRCRVLSGGEKARLAMARMLYDPPNFLVLDEPTNHLDIATKEM
HHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHH
LIAALADYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRS
HHHHHHCCCCEEEEEECCCHHHHHHHCCEEEECCCHHHHHCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIRLDNIGKQNGKQIVFIEASAALLKGEKIGLVGPNGAGKTTLFRMITGEEPPDEGQVSV
CCCCCCCCCCCCCEEEEEECCHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEE
DRGITIGYFSQDVGEMEGRSALAEVMDGAGPVSVVAAELKELETAMADPERADEMDAIIE
CCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RYGEVQGRFEELGGYALEGRAAEVLAGLGFSQEMMDGDVGKLSGGWKMRVALARILLMRP
HHHHHHHHHHHHCCEEECCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
DVMLLDEPSNHLDIESLIWLEAFLKGFDGALMMTSHDRAFMNRIVTKIVEIDAGALTTYS
CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEC
GDYEFYAQQRALNEKQQQAQFERQQAMLAKEIQFIERFKARASHAAQVQSRVKKLDKIDR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VEPPRRRESVSFEFQPAPRSGEDVASLKGVHKSYGSRTIYEGLDFHVRRRERWCVMGVNG
CCCCCHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCHHCCCHHHEECCCCEEEEECCC
AGKSTLLKLVTGATEPDAGTVAVGGSVKMAYFAQHAMEVLDGERTVFETLEDSFPQAGQG
CCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHH
ALRALAGCFGFSGDDADKRCRVLSGGEKARLAMARMLYDPPNFLVLDEPTNHLDIATKEM
HHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHH
LIAALADYEGTMLFVSHDRHFLAALSNRVLELTPDGIHQYGGGYTEYVARTGQEAPGLRS
HHHHHHCCCCEEEEEECCCHHHHHHHCCEEEECCCHHHHHCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]