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The map label for this gene is soxR [H]

Identifier: 154245003

GI number: 154245003

Start: 1206947

End: 1207468

Strand: Reverse

Name: soxR [H]

Synonym: Xaut_1053

Alternate gene names: 154245003

Gene position: 1207468-1206947 (Counterclockwise)

Preceding gene: 154245005

Following gene: 154244993

Centisome position: 22.74

GC content: 59.77

Gene sequence:

>522_bases
ATGGGCAAGCGGACCATTCGTATAAAACCTCGAGTATGGTTTAGGTCAAGGATTTTCGTCGTGGACAGACGAGGAAGCCC
GCCTCGGCAAATGACCGTGGGGGAAGTTGCGCAGCGCAGCGGAGTGGCCGTTTCGACTCTGCACTTCTACGAAGCCAAAG
GGCTCATCGCGGCAACGCGCAGCCGCGGCAACCAGCGGCGCTTTTCCAGGGACATTCTACGGCGGATCGCGATTATCCGG
GTGGCACAGCACCTGGGAATGCCGCTGGCTGAAATCTCCGCCCTGCTGAAACCGATACCGGCCGGGAAACAACCGTCAGC
TGCCGCGGTTCGCGATATGGTCGCCGGCTGGAGAGTGGCATTGCAGGCACGTATCGACGGTCTCACCCAGCTGCGCAACC
ATCTGGATGGTTGTATCGGATGCGGATGCCTGTCACTTGAGGAGTGCCCGCTCCGCAATCCTGCGGATGCGTTAAGTGCT
AGGGGAGCGGGGGCGGTTTTGCTACAGAGTAATTTGGAGTGA

Upstream 100 bases:

>100_bases
TTTTGTCCGTCCCGTACGAGCTTGCGTCGGGCCGGTCCTTCTTACGGACGCGGTCGCCAACGCGAAAGACTCTTCAGCCG
TGCTTGGCCAAAGGGCTTGC

Downstream 100 bases:

>100_bases
ATTCAAGCAATATATTTTACGTAGTCGTCATTTTTTAAACTAATGTATCATTTTTGGTGGAAACAACTGGGGCTGAAATC
GACCCTCATTGCGACCTTGC

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MGKRTIRIKPRVWFRSRIFVVDRRGSPPRQMTVGEVAQRSGVAVSTLHFYEAKGLIAATRSRGNQRRFSRDILRRIAIIR
VAQHLGMPLAEISALLKPIPAGKQPSAAAVRDMVAGWRVALQARIDGLTQLRNHLDGCIGCGCLSLEECPLRNPADALSA
RGAGAVLLQSNLE

Sequences:

>Translated_173_residues
MGKRTIRIKPRVWFRSRIFVVDRRGSPPRQMTVGEVAQRSGVAVSTLHFYEAKGLIAATRSRGNQRRFSRDILRRIAIIR
VAQHLGMPLAEISALLKPIPAGKQPSAAAVRDMVAGWRVALQARIDGLTQLRNHLDGCIGCGCLSLEECPLRNPADALSA
RGAGAVLLQSNLE
>Mature_172_residues
GKRTIRIKPRVWFRSRIFVVDRRGSPPRQMTVGEVAQRSGVAVSTLHFYEAKGLIAATRSRGNQRRFSRDILRRIAIIRV
AQHLGMPLAEISALLKPIPAGKQPSAAAVRDMVAGWRVALQARIDGLTQLRNHLDGCIGCGCLSLEECPLRNPADALSAR
GAGAVLLQSNLE

Specific function: Activates the transcription of the soxS gene which itself controls the superoxide response regulon. SoxR contains a 2Fe-2S iron-sulfur cluster that may act as a redox sensor system that recognizes superoxide. The variable redox state of the Fe-S cluster i

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790498, Length=141, Percent_Identity=54.6099290780142, Blast_Score=160, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR010211
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 18942; Mature: 18810

Theoretical pI: Translated: 11.98; Mature: 11.98

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKRTIRIKPRVWFRSRIFVVDRRGSPPRQMTVGEVAQRSGVAVSTLHFYEAKGLIAATR
CCCCEEEECCCEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEHHHHHCCHHHHHH
SRGNQRRFSRDILRRIAIIRVAQHLGMPLAEISALLKPIPAGKQPSAAAVRDMVAGWRVA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LQARIDGLTQLRNHLDGCIGCGCLSLEECPLRNPADALSARGAGAVLLQSNLE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCC
>Mature Secondary Structure 
GKRTIRIKPRVWFRSRIFVVDRRGSPPRQMTVGEVAQRSGVAVSTLHFYEAKGLIAATR
CCCEEEECCCEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEHHHHHCCHHHHHH
SRGNQRRFSRDILRRIAIIRVAQHLGMPLAEISALLKPIPAGKQPSAAAVRDMVAGWRVA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
LQARIDGLTQLRNHLDGCIGCGCLSLEECPLRNPADALSARGAGAVLLQSNLE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045804; 10984043 [H]