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The map label for this gene is oxyR [H]

Identifier: 154244993

GI number: 154244993

Start: 1195385

End: 1196335

Strand: Reverse

Name: oxyR [H]

Synonym: Xaut_1043

Alternate gene names: 154244993

Gene position: 1196335-1195385 (Counterclockwise)

Preceding gene: 154245003

Following gene: 154244991

Centisome position: 22.53

GC content: 64.67

Gene sequence:

>951_bases
ATGAACAGGTCCGAGGGCGAGGACGGTTGGCGGGACGTGCCCAATCTGAGCCTGCGGCAGCTCGCCTATTTCCTCACGGC
CGCGAACCAGCTGAGCGTGCTGCGCGCAGCCGAGGCTCTGAATGTCTCGCCCTCCTCGGTTTCCACTGCCATTTCCCAGA
TGGAGCGCATCCTGGGAGTGAAGCTGTTCATGCGGCGCCATGCGCGCGGCATGCTGCTCACGCCTGCGGGGCGGGATCTC
GCCGTCCATGCGCGCAGCATCCTCCTGCATGTACGGGAGATCGAGACCATGGGCGAGCGCGGCGGGCCGCGCGCCGCCAT
CCGTCTGAGCATTGGTTGCCTGAATACCTTGGCGCCCTATCTCGTACCCCGGCTGATGCAGGAGGTGGAGAAGGAGCACC
CCAAGATCCAGGCCCGCTGGCACGAAGACAGCCACGACAGCCTGCTCGAAGGCCTGCACAGCGGCGCCCTCGATCTGGCG
ATCCTCTATGACTACGACCTGCCCACCACCGTGCAGGCGATCACGCTGCGCACCATGCCGGTTCAACTCGTGGTGCCTGC
TGGTCACACGGTGCTTCAGCGGGAGCGCTTGCGCCTCGCCAACGTGGCGAAGGAACCCTTCATTCTTTTGGACCTGCCGA
AGACGCGGGACTATTTCCTCTCGATCTTCGCGGCGGAGCGCATCGAGCCGCGCATTGGTTACCGTACCGGTTCGTTCGAG
ATGCTGCGCAGCATGGTGGCCAGCGGCTTCGGCTACACGGTGCTGAACTTCTCGCCGCCTTACGTCGCCCCGGATCAGGG
TGGGCTCGTGTCTCGGCCGCTGGACGGACCGTTCCGGCCGCAGGAATTGGTGATCGCCCGCCTATACAGGACCCGCCCGC
CATCTCGCCTCGAACAGCTCGTCGAGACGGTAAAAGCCAGCGTTTCCAAGCTGAAGACATCCACCGGATGA

Upstream 100 bases:

>100_bases
TTTGTAGGCCCATATTGCATCACATTTGATCGTTTCTGCCGGCGACGGATGTTGCGCGGCTCAGGTGGTGAGCAGCTCTC
GGAAGCATGGGGCGCATGAT

Downstream 100 bases:

>100_bases
CGGTGGGTCAGCTGAATTCGCCGGCAAGGTCATAACCATCCGCGCTAATGTCCTGGCGGGTGCTTATCGGCCCGAAAACT
CGAAGGCCTATGACGTTGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNRSEGEDGWRDVPNLSLRQLAYFLTAANQLSVLRAAEALNVSPSSVSTAISQMERILGVKLFMRRHARGMLLTPAGRDL
AVHARSILLHVREIETMGERGGPRAAIRLSIGCLNTLAPYLVPRLMQEVEKEHPKIQARWHEDSHDSLLEGLHSGALDLA
ILYDYDLPTTVQAITLRTMPVQLVVPAGHTVLQRERLRLANVAKEPFILLDLPKTRDYFLSIFAAERIEPRIGYRTGSFE
MLRSMVASGFGYTVLNFSPPYVAPDQGGLVSRPLDGPFRPQELVIARLYRTRPPSRLEQLVETVKASVSKLKTSTG

Sequences:

>Translated_316_residues
MNRSEGEDGWRDVPNLSLRQLAYFLTAANQLSVLRAAEALNVSPSSVSTAISQMERILGVKLFMRRHARGMLLTPAGRDL
AVHARSILLHVREIETMGERGGPRAAIRLSIGCLNTLAPYLVPRLMQEVEKEHPKIQARWHEDSHDSLLEGLHSGALDLA
ILYDYDLPTTVQAITLRTMPVQLVVPAGHTVLQRERLRLANVAKEPFILLDLPKTRDYFLSIFAAERIEPRIGYRTGSFE
MLRSMVASGFGYTVLNFSPPYVAPDQGGLVSRPLDGPFRPQELVIARLYRTRPPSRLEQLVETVKASVSKLKTSTG
>Mature_316_residues
MNRSEGEDGWRDVPNLSLRQLAYFLTAANQLSVLRAAEALNVSPSSVSTAISQMERILGVKLFMRRHARGMLLTPAGRDL
AVHARSILLHVREIETMGERGGPRAAIRLSIGCLNTLAPYLVPRLMQEVEKEHPKIQARWHEDSHDSLLEGLHSGALDLA
ILYDYDLPTTVQAITLRTMPVQLVVPAGHTVLQRERLRLANVAKEPFILLDLPKTRDYFLSIFAAERIEPRIGYRTGSFE
MLRSMVASGFGYTVLNFSPPYVAPDQGGLVSRPLDGPFRPQELVIARLYRTRPPSRLEQLVETVKASVSKLKTSTG

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=297, Percent_Identity=30.976430976431, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=27.9352226720648, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790208, Length=243, Percent_Identity=30.8641975308642, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787806, Length=290, Percent_Identity=25.5172413793103, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788748, Length=242, Percent_Identity=25.2066115702479, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787601, Length=155, Percent_Identity=30.3225806451613, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788626, Length=244, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=265, Percent_Identity=25.6603773584906, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=24.2063492063492, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=276, Percent_Identity=27.1739130434783, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081904, Length=199, Percent_Identity=28.643216080402, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35268; Mature: 35268

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSEGEDGWRDVPNLSLRQLAYFLTAANQLSVLRAAEALNVSPSSVSTAISQMERILGV
CCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KLFMRRHARGMLLTPAGRDLAVHARSILLHVREIETMGERGGPRAAIRLSIGCLNTLAPY
HHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH
LVPRLMQEVEKEHPKIQARWHEDSHDSLLEGLHSGALDLAILYDYDLPTTVQAITLRTMP
HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHEEEEECC
VQLVVPAGHTVLQRERLRLANVAKEPFILLDLPKTRDYFLSIFAAERIEPRIGYRTGSFE
EEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHH
MLRSMVASGFGYTVLNFSPPYVAPDQGGLVSRPLDGPFRPQELVIARLYRTRPPSRLEQL
HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
VETVKASVSKLKTSTG
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRSEGEDGWRDVPNLSLRQLAYFLTAANQLSVLRAAEALNVSPSSVSTAISQMERILGV
CCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KLFMRRHARGMLLTPAGRDLAVHARSILLHVREIETMGERGGPRAAIRLSIGCLNTLAPY
HHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH
LVPRLMQEVEKEHPKIQARWHEDSHDSLLEGLHSGALDLAILYDYDLPTTVQAITLRTMP
HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHEEEEECC
VQLVVPAGHTVLQRERLRLANVAKEPFILLDLPKTRDYFLSIFAAERIEPRIGYRTGSFE
EEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHH
MLRSMVASGFGYTVLNFSPPYVAPDQGGLVSRPLDGPFRPQELVIARLYRTRPPSRLEQL
HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
VETVKASVSKLKTSTG
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA