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The map label for this gene is dppB [H]

Identifier: 153935101

GI number: 153935101

Start: 1791175

End: 1792149

Strand: Direct

Name: dppB [H]

Synonym: CLC_1697

Alternate gene names: 153935101

Gene position: 1791175-1792149 (Clockwise)

Preceding gene: 153935301

Following gene: 153935954

Centisome position: 47.63

GC content: 28.82

Gene sequence:

>975_bases
ATGAATAGTAGATTTTTAAAGATTTTAGAGTATGTAGCTACTGTAGTTATTATACTTACATTAAATTTTTTTATCCCTAG
GCTTATGCCTGGGGACCCTTTTGTTATATTATCTGGAGACACTGGAACAGAAATATCTGCTTATTCAGAAGAACAGATAG
AAAGGTATAAGTCCTATTATGGATTAGATAAACCTTTAGGAAATCAATACTTAGATTATATGAAAAACTTATGCAAAGGC
GATTTAGGATATAGCATTTATTATAATGATATGGTTAAAAACATAGTGAAAGCTAGATTTAAGTGGACTTTTATGTTGGT
TTTGAGCTCCATATCTATAAGCTTTATATTAGGGACTATTATAGGAACTCTATCAGCTTTTAATCAAAATAAAGGGTTAG
ATATGATTTTGTATGGCTTTTTTATGACTTTATCTGAAATACCTGGCTTTTTATTAGGAATAGTTTTTTTATTTATTCTA
GCAGGAAAATTGAATTTGTTTCCGCTATCTGGAGCTGTAACAGAGTTTAAAAATTATAATTCTTCTGGGGAGAAATTTTT
AGACATAATTTATCATGCAGCATTACCAATTATAACTTTAACTATATCCAAACTAGGAGAACTTTATCTTATAGCAAGAA
GCAGTGCTGTTTCTGTTATATCTAAAGAATATATCAAAACTGCAAAAGGAAAAGGACTAGGCAAAAAAGCAGTTATATTT
AAGCATATCCTTAGGAATTCCATTTTACCTATAATAACAAAAGTGTTTTTAAGTTTAGGATCTATAGTAGGGGGAGCTAT
ATTAGTTGAAAATGTATTTAATTATCCTGGGCTTGGAAAACTTATGAAAGAGGCAGTTTGCGTAAGGGATTATCCTCTTA
TACAGGGTATATTTTTAATAGTTACTTTTATGGTTATTTTTATGAATTTAATTTCAGATATGTTTTATAAAAAATTAGAT
CCAAGGGTGAGATAG

Upstream 100 bases:

>100_bases
AAAACTGATAAATATGATGGATATATGAATATGTATGATCATTTTGTGGTATCTCATAGTAAATTAACTTATTTACAAAG
GAAATAAGGTAGTTGATATT

Downstream 100 bases:

>100_bases
TATATGAAGAAGTATTGTAAAATTTTTAAAAAATGTTCTATTATAGGTAAATTATCTTTTTTAGTAGCATTTGTTTTTAT
AATTGTAGCTATTTTATGTC

Product: peptide/opine/nickel uptake ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYYGLDKPLGNQYLDYMKNLCKG
DLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTIIGTLSAFNQNKGLDMILYGFFMTLSEIPGFLLGIVFLFIL
AGKLNLFPLSGAVTEFKNYNSSGEKFLDIIYHAALPIITLTISKLGELYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLIVTFMVIFMNLISDMFYKKLD
PRVR

Sequences:

>Translated_324_residues
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYYGLDKPLGNQYLDYMKNLCKG
DLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTIIGTLSAFNQNKGLDMILYGFFMTLSEIPGFLLGIVFLFIL
AGKLNLFPLSGAVTEFKNYNSSGEKFLDIIYHAALPIITLTISKLGELYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLIVTFMVIFMNLISDMFYKKLD
PRVR
>Mature_324_residues
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYYGLDKPLGNQYLDYMKNLCKG
DLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTIIGTLSAFNQNKGLDMILYGFFMTLSEIPGFLLGIVFLFIL
AGKLNLFPLSGAVTEFKNYNSSGEKFLDIIYHAALPIITLTISKLGELYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLIVTFMVIFMNLISDMFYKKLD
PRVR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=329, Percent_Identity=33.1306990881459, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787053, Length=318, Percent_Identity=30.8176100628931, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=29.4670846394984, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787761, Length=337, Percent_Identity=29.673590504451, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788504, Length=356, Percent_Identity=27.5280898876405, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789888, Length=327, Percent_Identity=27.217125382263, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787550, Length=285, Percent_Identity=24.5614035087719, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36400; Mature: 36400

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHCCHHHHHHHHHHC
GLDKPLGNQYLDYMKNLCKGDLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTI
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGTLSAFNQNKGLDMILYGFFMTLSEIPGFLLGIVFLFILAGKLNLFPLSGAVTEFKNYN
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHCCC
SSGEKFLDIIYHAALPIITLTISKLGELYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHH
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH
VTFMVIFMNLISDMFYKKLDPRVR
HHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNSRFLKILEYVATVVIILTLNFFIPRLMPGDPFVILSGDTGTEISAYSEEQIERYKSYY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHCCHHHHHHHHHHC
GLDKPLGNQYLDYMKNLCKGDLGYSIYYNDMVKNIVKARFKWTFMLVLSSISISFILGTI
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGTLSAFNQNKGLDMILYGFFMTLSEIPGFLLGIVFLFILAGKLNLFPLSGAVTEFKNYN
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHCCC
SSGEKFLDIIYHAALPIITLTISKLGELYLIARSSAVSVISKEYIKTAKGKGLGKKAVIF
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHH
KHILRNSILPIITKVFLSLGSIVGGAILVENVFNYPGLGKLMKEAVCVRDYPLIQGIFLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH
VTFMVIFMNLISDMFYKKLDPRVR
HHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]