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The map label for this gene is dppC [H]

Identifier: 153935954

GI number: 153935954

Start: 1792153

End: 1792974

Strand: Direct

Name: dppC [H]

Synonym: CLC_1698

Alternate gene names: 153935954

Gene position: 1792153-1792974 (Clockwise)

Preceding gene: 153935101

Following gene: 153936650

Centisome position: 47.66

GC content: 29.32

Gene sequence:

>822_bases
ATGAAGAAGTATTGTAAAATTTTTAAAAAATGTTCTATTATAGGTAAATTATCTTTTTTAGTAGCATTTGTTTTTATAAT
TGTAGCTATTTTATGTCCACTATTATGTAAGCATTCTTATAATGTACCCAGTGGAAGTGCTTTAAATTCTCCATCTATGG
AACATATTCTAGGTACAGACGATTTAGGAATAGACCTATGGTCTCAGATTTGTTATGGTGGAAGGATAAGTATAACTTTA
GGTATATCTACAGCTCTTTTAGCTGGTACTTTTGGTAGTTTTGTAGGAATAATTTCAGGTTATTATGGAGGTATAATTGA
CAAATTTCTAATGAGATTTACAGACTTAATGCTAGTATTACCGCAGCTTCCTGTTATGATAGTCCTTGCTGCTTTTTTTG
GGCCTAAATTAAAAAATGTAATAATAGTACTAAGCATATTTTCTTGGGTAGAGCCTGCTAGAGTAATAAGATCCAAGGTT
ATGTCTATAAAGGATGAAAATTATATAAAAGCGGCTAAAAGTTATGGAGCAAGCTTTTTACATATATTCAGCAAACATAT
ATTGCCTCAAATTTTCCCACTAGTAAGCATTATTATGGTAAAAATAATAAGTAAAGCAATAATAGTAGAATCTTCCCTAT
CTTTTTTAGGATTAGGAGATCCAGTATCTAAAAGCTGGGGAATGATTTTAAATCATGCTATAGATTTTGATGGGATATAC
TTTACAGATTATTGGAAATGGTGGATTACAGTACCTTTATTTTCTATTATTATTTTAGTATTATCCTTTGCTTTTATAGG
GAAAGAGATAGAAAATTTTTAA

Upstream 100 bases:

>100_bases
TATACAGGGTATATTTTTAATAGTTACTTTTATGGTTATTTTTATGAATTTAATTTCAGATATGTTTTATAAAAAATTAG
ATCCAAGGGTGAGATAGTAT

Downstream 100 bases:

>100_bases
TATATTACATATCAATTGGAGGGAATTTTATTGGAAGACTTGCTAATAGTAAGAGATTTATCTGTTTATTACGAAAATGA
AAAGTTATATAAAGCAGTAG

Product: peptide/opine/nickel uptake ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKKYCKIFKKCSIIGKLSFLVAFVFIIVAILCPLLCKHSYNVPSGSALNSPSMEHILGTDDLGIDLWSQICYGGRISITL
GISTALLAGTFGSFVGIISGYYGGIIDKFLMRFTDLMLVLPQLPVMIVLAAFFGPKLKNVIIVLSIFSWVEPARVIRSKV
MSIKDENYIKAAKSYGASFLHIFSKHILPQIFPLVSIIMVKIISKAIIVESSLSFLGLGDPVSKSWGMILNHAIDFDGIY
FTDYWKWWITVPLFSIIILVLSFAFIGKEIENF

Sequences:

>Translated_273_residues
MKKYCKIFKKCSIIGKLSFLVAFVFIIVAILCPLLCKHSYNVPSGSALNSPSMEHILGTDDLGIDLWSQICYGGRISITL
GISTALLAGTFGSFVGIISGYYGGIIDKFLMRFTDLMLVLPQLPVMIVLAAFFGPKLKNVIIVLSIFSWVEPARVIRSKV
MSIKDENYIKAAKSYGASFLHIFSKHILPQIFPLVSIIMVKIISKAIIVESSLSFLGLGDPVSKSWGMILNHAIDFDGIY
FTDYWKWWITVPLFSIIILVLSFAFIGKEIENF
>Mature_273_residues
MKKYCKIFKKCSIIGKLSFLVAFVFIIVAILCPLLCKHSYNVPSGSALNSPSMEHILGTDDLGIDLWSQICYGGRISITL
GISTALLAGTFGSFVGIISGYYGGIIDKFLMRFTDLMLVLPQLPVMIVLAAFFGPKLKNVIIVLSIFSWVEPARVIRSKV
MSIKDENYIKAAKSYGASFLHIFSKHILPQIFPLVSIIMVKIISKAIIVESSLSFLGLGDPVSKSWGMILNHAIDFDGIY
FTDYWKWWITVPLFSIIILVLSFAFIGKEIENF

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=31.203007518797, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787054, Length=186, Percent_Identity=35.4838709677419, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787498, Length=260, Percent_Identity=32.3076923076923, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789964, Length=222, Percent_Identity=32.4324324324324, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789889, Length=228, Percent_Identity=28.5087719298246, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788505, Length=224, Percent_Identity=29.4642857142857, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787549, Length=217, Percent_Identity=29.0322580645161, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30397; Mature: 30397

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00443 GATASE_TYPE_II ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]