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The map label for this gene is ywbD [H]

Identifier: 152976933

GI number: 152976933

Start: 3300796

End: 3301995

Strand: Reverse

Name: ywbD [H]

Synonym: Bcer98_3236

Alternate gene names: 152976933

Gene position: 3301995-3300796 (Counterclockwise)

Preceding gene: 152976934

Following gene: 152976930

Centisome position: 80.79

GC content: 33.92

Gene sequence:

>1200_bases
ATGAGATCTGAAGTAGCTGTGAAAATAAAACCAAAATTTACAAAACAATTGAAAAGTGGCTATCCACTTATTCTAAAAGA
GGCAATTCAAAATGTAAATGACATACAGGAAGAAGGAACGATTCTTAATATATTAGATGAGAAAAATCAATTTCTTGGAA
AAGGATATTACGGTAAGCAAAATAAAGGGTATGGTTGGATTTTAACGAGAAAAGAGAAAGAACGCATTGACCAAGCTTTC
TTTGAACGAAAAATAAAATCAGCGTTGCATAAGAGAAAAGGTTTTTATAAATCAAATGATACGACAGCATTCCGTGTTGT
AAATGGTGAAGGTGATGGTCTTGGCGGTGTAATCATTGATTATTATGCTGGGTTTTATGTGATTAGCTGGTATAGCGAAG
GGATATATTCCTTTAAAAATGAAATCATTGGAGCTCTTCAAAAGGTAGCAAATGTCAAAGGAATCTATCAGAAGAAGCGC
TTTGATACAAAAGGAAAATATATTGAAGAAGACGACTTTGTAGTAGGAGAGCGTGGTGAATTCCCCCTTCTCGTCAAAGA
GAACGGTGTAAACTTTGCGGTGTATTTAAACGATGGTGCAATGGTAGGCGTATTTTTAGATCAGCGTAACGTTCGAAAAC
AAATTCGTGATACGTATGCAAAGGGCAGAACTGTTTTAAATATGTTCTCTTATACAGGTGCTTTCTCCGTATTCGCGGCC
CTTGGAGGAGCAATCAAAACAACAAGTGTCGATTTAGCAAATCGCAGTTTAAGTAAAACAATTGAACAATTTAGCGTAAA
TGACATTGACTATGAAACACAAGATATTATCGTTGAGGACGTATTCCATTACTTTAAATACGCAGCAAAGAAGCAGATGA
AGTTTGATATGGTTGTACTAGATCCGCCAAGCTTTGCACGTTCGAAAAAATATACATTTAGCGCAGCAAAAGACTATAAA
AACTTATTAAAAGAAACAATTGCCATTACAGAAAACAACGGGATTATCGTTGCTTCTACAAACTGTAGTACATTTGATAT
GAAAAAATTTAAAGGTTTTATCGATACAGCTTTTAAAGAGATGAATGGTAAGTATAAAGTTTTAGAAGAACATTCCTTGC
CAGAAGATTTCCGTACAATCGATCAATTTAAAGAAGGTAACTATTTAAAAGTAGTCTTTATTAAAAAGTTTAAAGGATAA

Upstream 100 bases:

>100_bases
AAGTGATAATATGGTATAGTGAAACGAGGCTTTTTTTCAGCCTCGTTTTTCGTGCTTCCTAATCCATTAGAAAGCATTTA
AGTAGAAAGGAAGTCATTAT

Downstream 100 bases:

>100_bases
TAATAAAAAAGAAGCTCATTTACAATTGAGCTTCTTTTTTATTGCACAATATGCTGCACGCGGCCAACTTGTCCGTCTTT
CAATCGAACTTTAATCCCGT

Product: PUA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MRSEVAVKIKPKFTKQLKSGYPLILKEAIQNVNDIQEEGTILNILDEKNQFLGKGYYGKQNKGYGWILTRKEKERIDQAF
FERKIKSALHKRKGFYKSNDTTAFRVVNGEGDGLGGVIIDYYAGFYVISWYSEGIYSFKNEIIGALQKVANVKGIYQKKR
FDTKGKYIEEDDFVVGERGEFPLLVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDTYAKGRTVLNMFSYTGAFSVFAA
LGGAIKTTSVDLANRSLSKTIEQFSVNDIDYETQDIIVEDVFHYFKYAAKKQMKFDMVVLDPPSFARSKKYTFSAAKDYK
NLLKETIAITENNGIIVASTNCSTFDMKKFKGFIDTAFKEMNGKYKVLEEHSLPEDFRTIDQFKEGNYLKVVFIKKFKG

Sequences:

>Translated_399_residues
MRSEVAVKIKPKFTKQLKSGYPLILKEAIQNVNDIQEEGTILNILDEKNQFLGKGYYGKQNKGYGWILTRKEKERIDQAF
FERKIKSALHKRKGFYKSNDTTAFRVVNGEGDGLGGVIIDYYAGFYVISWYSEGIYSFKNEIIGALQKVANVKGIYQKKR
FDTKGKYIEEDDFVVGERGEFPLLVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDTYAKGRTVLNMFSYTGAFSVFAA
LGGAIKTTSVDLANRSLSKTIEQFSVNDIDYETQDIIVEDVFHYFKYAAKKQMKFDMVVLDPPSFARSKKYTFSAAKDYK
NLLKETIAITENNGIIVASTNCSTFDMKKFKGFIDTAFKEMNGKYKVLEEHSLPEDFRTIDQFKEGNYLKVVFIKKFKG
>Mature_399_residues
MRSEVAVKIKPKFTKQLKSGYPLILKEAIQNVNDIQEEGTILNILDEKNQFLGKGYYGKQNKGYGWILTRKEKERIDQAF
FERKIKSALHKRKGFYKSNDTTAFRVVNGEGDGLGGVIIDYYAGFYVISWYSEGIYSFKNEIIGALQKVANVKGIYQKKR
FDTKGKYIEEDDFVVGERGEFPLLVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDTYAKGRTVLNMFSYTGAFSVFAA
LGGAIKTTSVDLANRSLSKTIEQFSVNDIDYETQDIIVEDVFHYFKYAAKKQMKFDMVVLDPPSFARSKKYTFSAAKDYK
NLLKETIAITENNGIIVASTNCSTFDMKKFKGFIDTAFKEMNGKYKVLEEHSLPEDFRTIDQFKEGNYLKVVFIKKFKG

Specific function: Unknown

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=380, Percent_Identity=27.8947368421053, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1787181, Length=242, Percent_Identity=30.1652892561983, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: NA

Molecular weight: Translated: 45652; Mature: 45652

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSEVAVKIKPKFTKQLKSGYPLILKEAIQNVNDIQEEGTILNILDEKNQFLGKGYYGKQ
CCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCC
NKGYGWILTRKEKERIDQAFFERKIKSALHKRKGFYKSNDTTAFRVVNGEGDGLGGVIID
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHH
YYAGFYVISWYSEGIYSFKNEIIGALQKVANVKGIYQKKRFDTKGKYIEEDDFVVGERGE
HHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEECCCCC
FPLLVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDTYAKGRTVLNMFSYTGAFSVFAA
CEEEEEECCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGGAIKTTSVDLANRSLSKTIEQFSVNDIDYETQDIIVEDVFHYFKYAAKKQMKFDMVVL
HCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEE
DPPSFARSKKYTFSAAKDYKNLLKETIAITENNGIIVASTNCSTFDMKKFKGFIDTAFKE
CCCCHHCCCCEEEHHHHHHHHHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHH
MNGKYKVLEEHSLPEDFRTIDQFKEGNYLKVVFIKKFKG
CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCC
>Mature Secondary Structure
MRSEVAVKIKPKFTKQLKSGYPLILKEAIQNVNDIQEEGTILNILDEKNQFLGKGYYGKQ
CCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCC
NKGYGWILTRKEKERIDQAFFERKIKSALHKRKGFYKSNDTTAFRVVNGEGDGLGGVIID
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHH
YYAGFYVISWYSEGIYSFKNEIIGALQKVANVKGIYQKKRFDTKGKYIEEDDFVVGERGE
HHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEECCCCC
FPLLVKENGVNFAVYLNDGAMVGVFLDQRNVRKQIRDTYAKGRTVLNMFSYTGAFSVFAA
CEEEEEECCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGGAIKTTSVDLANRSLSKTIEQFSVNDIDYETQDIIVEDVFHYFKYAAKKQMKFDMVVL
HCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEE
DPPSFARSKKYTFSAAKDYKNLLKETIAITENNGIIVASTNCSTFDMKKFKGFIDTAFKE
CCCCHHCCCCEEEHHHHHHHHHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHH
MNGKYKVLEEHSLPEDFRTIDQFKEGNYLKVVFIKKFKG
CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]