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The map label for this gene is ymdB [H]

Identifier: 152969614

GI number: 152969614

Start: 1209131

End: 1209658

Strand: Direct

Name: ymdB [H]

Synonym: KPN_01060

Alternate gene names: 152969614

Gene position: 1209131-1209658 (Clockwise)

Preceding gene: 152969613

Following gene: 152969615

Centisome position: 22.75

GC content: 60.61

Gene sequence:

>528_bases
ATGGCTGTTAAACCTGAGGTAATTCTCGGCGATATTACGACACTTGATGTCGATGTGATTGTTAATGCGGCAAATCCCTC
GCTGCTGGGTGGTGGCGGAGTAGACGGGGCCATCCACCGGGCGGCCGGTCCCGCGCTGCTGGCGGCTTGCAAGCAGGTGC
TGCAGCAGCAGGGCGAATGCCCTCCCGGGCATGCGGTAATTACTATTGCCGGCAATCTGCCGGCCAGCGCGGTGATCCAC
ACCGTGGGCCCGGTCTGGCACGGCGGTGACCGCATGGAGGCGCAAACCCTGGCCGATGCTTACAAAAACAGTCTGCAGTT
GGCCTCGGCAAACAACTATCGCTCCATTGCGTTTCCGGCGATAAGCACCGGCGTGTATGGCTATCCGAAAGAGGAAGCGG
CGGCGATCGCCGTGCGCACCGTCACCGCGTTTCTCACTCGCTATAACCCTCTTGAGCGCGTCCTGTTCGTCTGTTTTGAC
GAGGAAACGGCGGCTATCTATCGCCGCCTGCTGGCGTCATACCCCTGA

Upstream 100 bases:

>100_bases
TTCTCGTCACCGGACAAAGCGATAATCTTGCTCCCGCAGGCGAGAATGCCCTAGTATCGGCAGAAAGCCGTATCCACACG
CTATGCCGACAGGAGGAGAA

Downstream 100 bases:

>100_bases
TTCAACAGAATAGGCTATGATAACCGCCAGTCTTGACGGGAATGATGGGTAGCAGGAGGGAGCAGGGTGTCAGAAGGAAA
AGTCCAGCAGAAACAGCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MAVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGNLPASAVIH
TVGPVWHGGDRMEAQTLADAYKNSLQLASANNYRSIAFPAISTGVYGYPKEEAAAIAVRTVTAFLTRYNPLERVLFVCFD
EETAAIYRRLLASYP

Sequences:

>Translated_175_residues
MAVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGNLPASAVIH
TVGPVWHGGDRMEAQTLADAYKNSLQLASANNYRSIAFPAISTGVYGYPKEEAAAIAVRTVTAFLTRYNPLERVLFVCFD
EETAAIYRRLLASYP
>Mature_174_residues
AVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGNLPASAVIHT
VGPVWHGGDRMEAQTLADAYKNSLQLASANNYRSIAFPAISTGVYGYPKEEAAAIAVRTVTAFLTRYNPLERVLFVCFDE
ETAAIYRRLLASYP

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=167, Percent_Identity=50.8982035928144, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI13569840, Length=173, Percent_Identity=47.9768786127168, Blast_Score=139, Evalue=9e-34,
Organism=Homo sapiens, GI154813199, Length=132, Percent_Identity=46.2121212121212, Blast_Score=111, Evalue=3e-25,
Organism=Homo sapiens, GI20336746, Length=174, Percent_Identity=31.6091954022989, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI207450721, Length=167, Percent_Identity=38.3233532934132, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI8923143, Length=167, Percent_Identity=38.3233532934132, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI93141018, Length=166, Percent_Identity=28.9156626506024, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI93141020, Length=166, Percent_Identity=28.9156626506024, Blast_Score=84, Evalue=4e-17,
Organism=Homo sapiens, GI4758496, Length=166, Percent_Identity=28.9156626506024, Blast_Score=84, Evalue=4e-17,
Organism=Homo sapiens, GI226371718, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371716, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371714, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371712, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371710, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371706, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI8923920, Length=166, Percent_Identity=28.3132530120482, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI165377137, Length=164, Percent_Identity=31.0975609756098, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI1787283, Length=171, Percent_Identity=69.0058479532164, Blast_Score=245, Evalue=1e-66,
Organism=Caenorhabditis elegans, GI17538214, Length=171, Percent_Identity=46.7836257309941, Blast_Score=129, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24586353, Length=139, Percent_Identity=34.5323741007194, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18400; Mature: 18269

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGEC
CCCCCCEEECCCEEEEEEEEEECCCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
PPGHAVITIAGNLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLASANNYRSIAFPA
CCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCCEEECCH
ISTGVYGYPKEEAAAIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASYP
HHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGEC
CCCCCEEECCCEEEEEEEEEECCCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
PPGHAVITIAGNLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLASANNYRSIAFPA
CCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCCEEECCH
ISTGVYGYPKEEAAAIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASYP
HHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]