Click here to switch to the map view.

The map label for this gene is ycdY [H]

Identifier: 152969612

GI number: 152969612

Start: 1207841

End: 1208395

Strand: Direct

Name: ycdY [H]

Synonym: KPN_01058

Alternate gene names: 152969612

Gene position: 1207841-1208395 (Clockwise)

Preceding gene: 152969611

Following gene: 152969613

Centisome position: 22.72

GC content: 62.52

Gene sequence:

>555_bases
ATGAACGAGTTTTCAATCCTCTGCCGCGTGCTGGGTTCGCTGTATTACCGTCAACCGCAGGACCCGCTGCTGGTGCCGCT
GTTTACCCTGATCCGCGAGGGCAAACTGGCCGCCAGCTGGCCGCTTGAGCAGGACGAGCTGCTGGCGCGTCTGCAGAAAA
GCTGTGAAATGCAATCCCTGGCGACGGACTATAATGCGCTGTTCGTCGGTGAAGCCTGCAGCGTCCCGCCGTACCGTAGC
GCGTGGGTGGAGGGTTCCTCGGAAGCGGAAGTTCGGGCTTTTCTGAGCGAACACGGCATCCCGACAGGGGAAGGTCCGGC
GGATCATCTCGGCTCGCTGCTGCTGGCCGCCTCCTGGCTGGAGGATCATGCCGCAGAAGACCAGAGCGAGACGCTGGAGC
TCCTGTTTGCCGACTATATCCTGCCGTGGTGCGGGACGATGCTGGGGAAAGTCGAAGCCCATGCGCACACGCCGTTCTGG
CGCACCATGGCGCCGTTGACCCGCGACGCCATCGCCGCGATGTGGGACGAGCTGCAGGAAGAAGATGAGCAATAA

Upstream 100 bases:

>100_bases
AACGTTTCTCCGCGTCGCCTGCTTAACTTCCTCGAGTCGCGGGGCATGCCGGCGATCCCGGAATTTGCTGACCTTTAATT
TGTATAACTGGAATAACTGA

Downstream 100 bases:

>100_bases
TATGTGATGCAAATCACCATATGAATGCAACTGAAAGAAAGTTCATTCATATACTGTGTTTTAGATCGCATTCTTCCGGC
GCGTATCTGCTAGGATACGC

Product: putative oxidoreductase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAASWPLEQDELLARLQKSCEMQSLATDYNALFVGEACSVPPYRS
AWVEGSSEAEVRAFLSEHGIPTGEGPADHLGSLLLAASWLEDHAAEDQSETLELLFADYILPWCGTMLGKVEAHAHTPFW
RTMAPLTRDAIAAMWDELQEEDEQ

Sequences:

>Translated_184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAASWPLEQDELLARLQKSCEMQSLATDYNALFVGEACSVPPYRS
AWVEGSSEAEVRAFLSEHGIPTGEGPADHLGSLLLAASWLEDHAAEDQSETLELLFADYILPWCGTMLGKVEAHAHTPFW
RTMAPLTRDAIAAMWDELQEEDEQ
>Mature_184_residues
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAASWPLEQDELLARLQKSCEMQSLATDYNALFVGEACSVPPYRS
AWVEGSSEAEVRAFLSEHGIPTGEGPADHLGSLLLAASWLEDHAAEDQSETLELLFADYILPWCGTMLGKVEAHAHTPFW
RTMAPLTRDAIAAMWDELQEEDEQ

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family [H]

Homologues:

Organism=Escherichia coli, GI1787272, Length=184, Percent_Identity=78.804347826087, Blast_Score=314, Evalue=2e-87,
Organism=Escherichia coli, GI87081942, Length=184, Percent_Identity=31.5217391304348, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 20596; Mature: 20596

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAASWPLEQDELLARLQKSCEMQSL
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ATDYNALFVGEACSVPPYRSAWVEGSSEAEVRAFLSEHGIPTGEGPADHLGSLLLAASWL
HHCCCCEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDHAAEDQSETLELLFADYILPWCGTMLGKVEAHAHTPFWRTMAPLTRDAIAAMWDELQE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
EDEQ
HCCC
>Mature Secondary Structure
MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAASWPLEQDELLARLQKSCEMQSL
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ATDYNALFVGEACSVPPYRSAWVEGSSEAEVRAFLSEHGIPTGEGPADHLGSLLLAASWL
HHCCCCEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDHAAEDQSETLELLFADYILPWCGTMLGKVEAHAHTPFWRTMAPLTRDAIAAMWDELQE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
EDEQ
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]