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The map label for this gene is ropB [H]

Identifier: 150396008

GI number: 150396008

Start: 842231

End: 842869

Strand: Direct

Name: ropB [H]

Synonym: Smed_0784

Alternate gene names: 150396008

Gene position: 842231-842869 (Clockwise)

Preceding gene: 150396002

Following gene: 150396013

Centisome position: 22.27

GC content: 64.95

Gene sequence:

>639_bases
ATGCGTATGCTCACCACCACTCTCATGGCCTCGGCCATGGCCCTCGTTGCCTTCCAGGCCGCCCACGCCGCTGACGTGGT
CGACGAAATTCCGGCTGCTCCGGCTGCCGAATATACCGAACCGGCAGTTCGGAACTGGTCGGGCGCCTATGTCGGGGGCA
CCATCGACTGGCACCATGGCGAGGCCGATGCGACCGGCAACAACAAATCGGTCGGAACTGGCGGCGGCCTCTATGGCGGC
TACAACGTTCAGGATGGCCAAATGGTTTATGGCGGTGAGGCCGACATCAACTACACCGGCAACGACTCGCATTCGAGCGG
CCGTCGAGTCCAGCAGGGGCTCAACGGCTCGGTTCGCGCCCGCGTCGGTGTCGATGTGAATCCGGTCCTCGTCTACGGCA
CGGCCGGCGTCGCCCTCGGCAACGCCGAGCTCAAGACGCCTGCGGGCTCCGACGACAAGACGCTGGTCGGCTGGACGGCC
GGCGTCGGCGCCGAGACCTTCGTCACCGACAACATCACGGCGCGCGCCGAATACCGTTACACGGATTACGGTTCGAAGGA
CTTCCGCACCGGCGGCACGACGATCTCGTCCGGCTATGACGAGCACGCCGTCAAGCTCGGTATGGGCGTCAAGTTCTGA

Upstream 100 bases:

>100_bases
TCCTGATCAATTTCGGGTCAACCGGGCGGGTTAAATTGCAGATGTCCGGTGTTCCGCTGAGAACAACTATAACGGAACGC
CGGTTCGAAAGGAGAATAGT

Downstream 100 bases:

>100_bases
TCCGTATCAAAGGATCCTAAAAAAAGGCCGGGGCGACCCGGCCTTTCTTTTTGCGGTGGGGCTGATAAGCGATGAAGTTT
TTAGGCTTTCAGGCCTTGAA

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MRMLTTTLMASAMALVAFQAAHAADVVDEIPAAPAAEYTEPAVRNWSGAYVGGTIDWHHGEADATGNNKSVGTGGGLYGG
YNVQDGQMVYGGEADINYTGNDSHSSGRRVQQGLNGSVRARVGVDVNPVLVYGTAGVALGNAELKTPAGSDDKTLVGWTA
GVGAETFVTDNITARAEYRYTDYGSKDFRTGGTTISSGYDEHAVKLGMGVKF

Sequences:

>Translated_212_residues
MRMLTTTLMASAMALVAFQAAHAADVVDEIPAAPAAEYTEPAVRNWSGAYVGGTIDWHHGEADATGNNKSVGTGGGLYGG
YNVQDGQMVYGGEADINYTGNDSHSSGRRVQQGLNGSVRARVGVDVNPVLVYGTAGVALGNAELKTPAGSDDKTLVGWTA
GVGAETFVTDNITARAEYRYTDYGSKDFRTGGTTISSGYDEHAVKLGMGVKF
>Mature_212_residues
MRMLTTTLMASAMALVAFQAAHAADVVDEIPAAPAAEYTEPAVRNWSGAYVGGTIDWHHGEADATGNNKSVGTGGGLYGG
YNVQDGQMVYGGEADINYTGNDSHSSGRRVQQGLNGSVRARVGVDVNPVLVYGTAGVALGNAELKTPAGSDDKTLVGWTA
GVGAETFVTDNITARAEYRYTDYGSKDFRTGGTTISSGYDEHAVKLGMGVKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the omp25/ropB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR000498 [H]

Pfam domain/function: PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 22051; Mature: 22051

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMLTTTLMASAMALVAFQAAHAADVVDEIPAAPAAEYTEPAVRNWSGAYVGGTIDWHHG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEECCEEEECCC
EADATGNNKSVGTGGGLYGGYNVQDGQMVYGGEADINYTGNDSHSSGRRVQQGLNGSVRA
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCHHHHHCCCCCEEE
RVGVDVNPVLVYGTAGVALGNAELKTPAGSDDKTLVGWTAGVGAETFVTDNITARAEYRY
EECCCCCCEEEEECCCEEECCCEECCCCCCCCCEEEEEECCCCCCEEEECCEEEEEEEEE
TDYGSKDFRTGGTTISSGYDEHAVKLGMGVKF
CCCCCCCCCCCCCEECCCCCCCEEEECCCCCC
>Mature Secondary Structure
MRMLTTTLMASAMALVAFQAAHAADVVDEIPAAPAAEYTEPAVRNWSGAYVGGTIDWHHG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEECCEEEECCC
EADATGNNKSVGTGGGLYGGYNVQDGQMVYGGEADINYTGNDSHSSGRRVQQGLNGSVRA
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCHHHHHCCCCCEEE
RVGVDVNPVLVYGTAGVALGNAELKTPAGSDDKTLVGWTAGVGAETFVTDNITARAEYRY
EECCCCCCEEEEECCCEEECCCEECCCCCCCCCEEEEEECCCCCCEEEECCEEEEEEEEE
TDYGSKDFRTGGTTISSGYDEHAVKLGMGVKF
CCCCCCCCCCCCCEECCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8589412 [H]