| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is yhgF [C]
Identifier: 150395910
GI number: 150395910
Start: 738473
End: 740779
Strand: Direct
Name: yhgF [C]
Synonym: Smed_0686
Alternate gene names: 150395910
Gene position: 738473-740779 (Clockwise)
Preceding gene: 150395909
Following gene: 150395911
Centisome position: 19.53
GC content: 64.46
Gene sequence:
>2307_bases ATGGTCACGACCGCGAGACCCATCGCCGCCATCATTGCCAGCGAAATCAAGGCGAGCGCCGCACAGGTTGCAGCCGCCGT CGAATTGTTGGACGGTGGTGCGACCGTGCCTTTCATCGCCCGCTACCGCAAGGAAGCCACGGGCGGGCTCGACGACACGC AGCTGCGCGTCCTGTCGGAGCGCCTCACCTATCTGCGCGAGCTCGAGGCGCGGCGTGCATCGATCCTCGATTCGATCCGC AGCCAGGACAAGATGACCGATGAACTCGAACGCAAGATCGAGGGCGCGGTTACCAAAGCGGAGCTCGAAGACATCTACCT GCCCTTTAAGCCGAAGCGCCGCACCAAAGCGGAGATCGCGCGCGAGCGGGGCCTTGGCGCGCTGGCGGACGCCATCCTTT CCGACCGTTCGACAGCGCCTGCCGAACGTGCTGCCGCCTTTCTCACCGCCGATGTGCCGGACGCCAAGGCCGCACTCGAT GGTGCCCGCGACATCATCGCCGAGGGCATGACCGAGAATGCCGAGCTTCTTGGGCAGCTGCGGAGCTACATGCGGGGTGC AGCCTTCCTGCGCGCCCGCGTCGTGGGTGGCAAACAGGAGTCCGGCGCAAAGTTCTCCGACTATTTCGATCACTCCGAGC GATGGGCGACGGTGCCCGGCCACCGCGCGCTTGCGATGCTTCGCGGCTGGAACGAGGAGGTCCTGTCCGTGGACATCGTT GTCGACGAGGATGCGGCGCCTTCGCATAGACCGATCGAGCGTATGATCGCGGCTGCCTACAGCGTTGGCGACCGGCTGCC CGGTGACAAATGGCTGCTGGAGGTCATCGGCTGGACCTGGCGCGTGAAGCTTTCGCTTTCGCTATCACTGGACCTGATGC GCGAGCTTCGAGAGCGCGCCGAGGAGGAGGCCATCCGCGTCTTCGCGCGCAATCTCAAGGACCTGCTGCTTGCAGCGCCT GCGGGCTCGCGTCCGACCATGGGCCTCGACCCTGGCATCCGGACGGGCGTCAAGGTCGCGATCGTCGACGGTACCGGCAA GCTCCTCGACACGAGCACGGTCTATCCATTTCCGCCGAAGAACGACATTCGCGGGACTCAGGCAGAGCTTGCGGCGCTTG TGCGCAAACACAAGGTGGAACTTATCGCGATCGGCAACGGCACCGGGAGCCGTGAAACCGAAAAGCTCGTCGCGGATATG CTCGCTGCCATGCCGGCGCCGAAGCCGACAAAGGTGATCGTCTCCGAGGCGGGAGCATCGGTCTATTCCGCTTCGGAGAC GGCGGCTGCCGAGTTCCCCGGCCTCGACGTGTCCTTGCGGGGTGCCGTTTCCATCGCGCGCCGGCTCCAGGATCCCTTGG CCGAGCTCGTGAAAATCGAACCGAAGTCGATCGGGGTCGGTCAATATCAGCACGACGTTGATCAGTCGAAGCTCAGCCGT TCGCTGGATGCCGTCGTCGAGGATGCCGTGAACGCGGTCGGGGTCGATCTCAACACCGCCTCGGCGCCGCTGCTGGCGCG CGTTTCGGGGTTGGGTAAGTCCTCGGCGGAGGCGATCGTTGCGCATCGCGATGCGCTGGGCGCCTTCGCCAGCCGCAAGG ACCTTTTGAAAGTGCCTCGCCTCGGTGCCCGCACTTTCGAACAATGCGCCGGCTTCCTCAGGATCACGAACGGCTCCGAG CCGCTCGATGCGTCTGCGGTGCATCCGGAGGCTTATGGAGTCGCAAAGAAGATCGTCGCCGCCTGCGGTCGTGATGTGCG TTCTCTGATGGGCGACAGCGCCGAACTGAAGAAGCTCGATCCCCGCATTTTCGTCGATGAACGCTTCGGCCTGCCAACTG TCAAGGACATTCTCGCTGAACTGGAGAAACCGGGTCGCGATCCACGCCCGAGCTTCAAAACGGCCACCTTCGCGGAAGGG ATCGACGACATCAAGGATCTGAAGGTCGGCATGCGCCTTGAGGGCACGGTGACCAATGTCGCCGCCTTCGGCGCTTTCGT CGATATCGGCGTGCATCAGGACGGTCTCGTCCATGTGTCGCAATTGGCCGACCGCTTCGTCAAGGATCCGCATGAGGTCG TCAAAGCCGGGGACGTCGTGCACGTCCGTGTCACGGAGGTCGATGTGGCGCGAAAGCGCATTGGACTGTCGATGCGCAAG GAAGGTGGCGCCGAAACGCCCCGAGAGGCGAGGGGGACGGCGCCGAACGGCGGCAATCGGGGTGCGCCCGCTCGACCGCA GCCGCCGCAGCAGCCGGCGCAAGGCGCCTTCGGTGAAGCGCTGATCGCGGCGATGAAGAAAAAATGA
Upstream 100 bases:
>100_bases GATCTTCTGTGGAGTTCGCCAAGGCGGTCATCGGCCTTCACTTGGCCTTGATGGTCTGCGCCGGTATGGTCACGGCCGAA ACAGGAAGTGGAACGAGAGA
Downstream 100 bases:
>100_bases AAGGGTCCGATGGAACGGCCCGCCTGGGAGGATCGTTACCGGAGCATCGATGCTGGTGTGATGGCTCAGGTTACGCTCTG TAAATAGGCAACCGAGATAT
Product: RNA-binding S1 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 768; Mature: 768
Protein sequence:
>768_residues MVTTARPIAAIIASEIKASAAQVAAAVELLDGGATVPFIARYRKEATGGLDDTQLRVLSERLTYLRELEARRASILDSIR SQDKMTDELERKIEGAVTKAELEDIYLPFKPKRRTKAEIARERGLGALADAILSDRSTAPAERAAAFLTADVPDAKAALD GARDIIAEGMTENAELLGQLRSYMRGAAFLRARVVGGKQESGAKFSDYFDHSERWATVPGHRALAMLRGWNEEVLSVDIV VDEDAAPSHRPIERMIAAAYSVGDRLPGDKWLLEVIGWTWRVKLSLSLSLDLMRELRERAEEEAIRVFARNLKDLLLAAP AGSRPTMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPKNDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADM LAAMPAPKPTKVIVSEAGASVYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLSR SLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDALGAFASRKDLLKVPRLGARTFEQCAGFLRITNGSE PLDASAVHPEAYGVAKKIVAACGRDVRSLMGDSAELKKLDPRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEG IDDIKDLKVGMRLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVRVTEVDVARKRIGLSMRK EGGAETPREARGTAPNGGNRGAPARPQPPQQPAQGAFGEALIAAMKKK
Sequences:
>Translated_768_residues MVTTARPIAAIIASEIKASAAQVAAAVELLDGGATVPFIARYRKEATGGLDDTQLRVLSERLTYLRELEARRASILDSIR SQDKMTDELERKIEGAVTKAELEDIYLPFKPKRRTKAEIARERGLGALADAILSDRSTAPAERAAAFLTADVPDAKAALD GARDIIAEGMTENAELLGQLRSYMRGAAFLRARVVGGKQESGAKFSDYFDHSERWATVPGHRALAMLRGWNEEVLSVDIV VDEDAAPSHRPIERMIAAAYSVGDRLPGDKWLLEVIGWTWRVKLSLSLSLDLMRELRERAEEEAIRVFARNLKDLLLAAP AGSRPTMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPKNDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADM LAAMPAPKPTKVIVSEAGASVYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLSR SLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDALGAFASRKDLLKVPRLGARTFEQCAGFLRITNGSE PLDASAVHPEAYGVAKKIVAACGRDVRSLMGDSAELKKLDPRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEG IDDIKDLKVGMRLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVRVTEVDVARKRIGLSMRK EGGAETPREARGTAPNGGNRGAPARPQPPQQPAQGAFGEALIAAMKKK >Mature_768_residues MVTTARPIAAIIASEIKASAAQVAAAVELLDGGATVPFIARYRKEATGGLDDTQLRVLSERLTYLRELEARRASILDSIR SQDKMTDELERKIEGAVTKAELEDIYLPFKPKRRTKAEIARERGLGALADAILSDRSTAPAERAAAFLTADVPDAKAALD GARDIIAEGMTENAELLGQLRSYMRGAAFLRARVVGGKQESGAKFSDYFDHSERWATVPGHRALAMLRGWNEEVLSVDIV VDEDAAPSHRPIERMIAAAYSVGDRLPGDKWLLEVIGWTWRVKLSLSLSLDLMRELRERAEEEAIRVFARNLKDLLLAAP AGSRPTMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPKNDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADM LAAMPAPKPTKVIVSEAGASVYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLSR SLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDALGAFASRKDLLKVPRLGARTFEQCAGFLRITNGSE PLDASAVHPEAYGVAKKIVAACGRDVRSLMGDSAELKKLDPRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEG IDDIKDLKVGMRLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVRVTEVDVARKRIGLSMRK EGGAETPREARGTAPNGGNRGAPARPQPPQQPAQGAFGEALIAAMKKK
Specific function: Unknown
COG id: COG2183
COG function: function code K; Transcriptional accessory protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Homo sapiens, GI221136781, Length=782, Percent_Identity=31.4578005115089, Blast_Score=332, Evalue=1e-90, Organism=Homo sapiens, GI27597090, Length=732, Percent_Identity=22.5409836065574, Blast_Score=98, Evalue=2e-20, Organism=Escherichia coli, GI87082262, Length=752, Percent_Identity=60.1063829787234, Blast_Score=852, Evalue=0.0, Organism=Escherichia coli, GI1787140, Length=79, Percent_Identity=39.2405063291139, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17511129, Length=727, Percent_Identity=28.4731774415406, Blast_Score=243, Evalue=3e-64, Organism=Caenorhabditis elegans, GI17552892, Length=336, Percent_Identity=30.0595238095238, Blast_Score=94, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6321552, Length=188, Percent_Identity=28.7234042553192, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI62484314, Length=746, Percent_Identity=32.4396782841823, Blast_Score=363, Evalue=1e-100, Organism=Drosophila melanogaster, GI24640080, Length=450, Percent_Identity=23.1111111111111, Blast_Score=81, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR005227 - InterPro: IPR006641 - InterPro: IPR022967 - InterPro: IPR018974 - InterPro: IPR023097 [H]
Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]
EC number: NA
Molecular weight: Translated: 82464; Mature: 82464
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTTARPIAAIIASEIKASAAQVAAAVELLDGGATVPFIARYRKEATGGLDDTQLRVLSE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH RLTYLRELEARRASILDSIRSQDKMTDELERKIEGAVTKAELEDIYLPFKPKRRTKAEIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH RERGLGALADAILSDRSTAPAERAAAFLTADVPDAKAALDGARDIIAEGMTENAELLGQL HHHCCHHHHHHHHCCCCCCCHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH RSYMRGAAFLRARVVGGKQESGAKFSDYFDHSERWATVPGHRALAMLRGWNEEVLSVDIV HHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHCCCCCCEEEEEE VDEDAAPSHRPIERMIAAAYSVGDRLPGDKWLLEVIGWTWRVKLSLSLSLDLMRELRERA EECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEEEHHHHHHHHHHHHH EEEAIRVFARNLKDLLLAAPAGSRPTMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPK HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCC NDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADMLAAMPAPKPTKVIVSEAGAS CCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH VYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLSR HCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH SLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDALGAFASRKDLLKVPR HHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC LGARTFEQCAGFLRITNGSEPLDASAVHPEAYGVAKKIVAACGRDVRSLMGDSAELKKLD CCHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCHHHHHCC PRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEGIDDIKDLKVGMRLEGTVTNV CCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCHHHHH AAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVRVTEVDVARKRIGLSMRK HHHHHHHEECCCCCCHHHHHHHHHHHHCCHHHHHHCCCEEEEEEEHHHHHHHHHCCHHHC EGGAETPREARGTAPNGGNRGAPARPQPPQQPAQGAFGEALIAAMKKK CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MVTTARPIAAIIASEIKASAAQVAAAVELLDGGATVPFIARYRKEATGGLDDTQLRVLSE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH RLTYLRELEARRASILDSIRSQDKMTDELERKIEGAVTKAELEDIYLPFKPKRRTKAEIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH RERGLGALADAILSDRSTAPAERAAAFLTADVPDAKAALDGARDIIAEGMTENAELLGQL HHHCCHHHHHHHHCCCCCCCHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH RSYMRGAAFLRARVVGGKQESGAKFSDYFDHSERWATVPGHRALAMLRGWNEEVLSVDIV HHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHCCCCCCEEEEEE VDEDAAPSHRPIERMIAAAYSVGDRLPGDKWLLEVIGWTWRVKLSLSLSLDLMRELRERA EECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEEEHHHHHHHHHHHHH EEEAIRVFARNLKDLLLAAPAGSRPTMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPK HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCC NDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADMLAAMPAPKPTKVIVSEAGAS CCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH VYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLSR HCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH SLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDALGAFASRKDLLKVPR HHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC LGARTFEQCAGFLRITNGSEPLDASAVHPEAYGVAKKIVAACGRDVRSLMGDSAELKKLD CCHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCHHHHHCC PRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEGIDDIKDLKVGMRLEGTVTNV CCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCHHHHH AAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVRVTEVDVARKRIGLSMRK HHHHHHHEECCCCCCHHHHHHHHHHHHCCHHHHHHCCCEEEEEEEHHHHHHHHHCCHHHC EGGAETPREARGTAPNGGNRGAPARPQPPQQPAQGAFGEALIAAMKKK CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]