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The map label for this gene is rpoZ [H]

Identifier: 150395900

GI number: 150395900

Start: 728394

End: 728801

Strand: Direct

Name: rpoZ [H]

Synonym: Smed_0676

Alternate gene names: 150395900

Gene position: 728394-728801 (Clockwise)

Preceding gene: 150395898

Following gene: 150395901

Centisome position: 19.26

GC content: 62.25

Gene sequence:

>408_bases
ATGGCCCGCGTCACCGTCGAAGACTGCATCGACAAGGTCGAAAACCGTTTTGAACTCGTCCTTCTTGCCAGCCACCGCGC
GCGCCTGGTGTCCCAGGGCGCACCGATCACGGTTGACCGCGACAACGACAAGAACCCGGTCGTTGCGCTGCGCGAGATCG
CCGACGAGACCCTGTCGCCCGGCGATCTGAAGGAAGACCTTATCCATTCGTTGCAGAAGCACGTCGAGGTGGACGAGCCG
GAACCCGATCCGGCGTCGCTGGTTCAGACGGAAGCGACACCTGCCTTCGCCGAAGCCGCCGAAGAGGAGGACCAGCCGGA
AGCGCTGACCTTCGACCGCATGTCCGAAGAAGAACTGTTGGCCGGTATCGAAGGCCTCGTTCCTCCGGAAAAGAGCGACG
ACTACTGA

Upstream 100 bases:

>100_bases
GGAGCTGATGGAACCGCATTTCAGCGGACGTTCCGGTTTCGCGTTGTTTAACCTGCCGCGGCGATCGCCGCCGCATCTCT
TAGTCGTAAAGGACAAGGCC

Downstream 100 bases:

>100_bases
GATAGTTCCGGAACCATAGTTCCGACGCGTTATCGAAGCAGTGCGCCACTCGTGTGATTGGCGCACTTTTTTATTTGCCT
GATTTCAGGAGCCGTCAGCG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MARVTVEDCIDKVENRFELVLLASHRARLVSQGAPITVDRDNDKNPVVALREIADETLSPGDLKEDLIHSLQKHVEVDEP
EPDPASLVQTEATPAFAEAAEEEDQPEALTFDRMSEEELLAGIEGLVPPEKSDDY

Sequences:

>Translated_135_residues
MARVTVEDCIDKVENRFELVLLASHRARLVSQGAPITVDRDNDKNPVVALREIADETLSPGDLKEDLIHSLQKHVEVDEP
EPDPASLVQTEATPAFAEAAEEEDQPEALTFDRMSEEELLAGIEGLVPPEKSDDY
>Mature_134_residues
ARVTVEDCIDKVENRFELVLLASHRARLVSQGAPITVDRDNDKNPVVALREIADETLSPGDLKEDLIHSLQKHVEVDEPE
PDPASLVQTEATPAFAEAAEEEDQPEALTFDRMSEEELLAGIEGLVPPEKSDDY

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 14933; Mature: 14801

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVENRFELVLLASHRARLVSQGAPITVDRDNDKNPVVALREIADETLSP
CCCCCHHHHHHHHHHHHEEEEECCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCC
GDLKEDLIHSLQKHVEVDEPEPDPASLVQTEATPAFAEAAEEEDQPEALTFDRMSEEELL
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCEEEHHCCCHHHHH
AGIEGLVPPEKSDDY
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVENRFELVLLASHRARLVSQGAPITVDRDNDKNPVVALREIADETLSP
CCCCHHHHHHHHHHHHEEEEECCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCC
GDLKEDLIHSLQKHVEVDEPEPDPASLVQTEATPAFAEAAEEEDQPEALTFDRMSEEELL
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCEEEHHCCCHHHHH
AGIEGLVPPEKSDDY
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]