| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is rsh [H]
Identifier: 150395901
GI number: 150395901
Start: 728903
End: 731128
Strand: Direct
Name: rsh [H]
Synonym: Smed_0677
Alternate gene names: 150395901
Gene position: 728903-731128 (Clockwise)
Preceding gene: 150395900
Following gene: 150395902
Centisome position: 19.27
GC content: 60.65
Gene sequence:
>2226_bases ATGATGCGCCAATACGAGCTCGTCGAGCGCGTGCAGAAATACAAGCCCGACGTCAACGAGGCCCTGCTGAACAAGGCCTA TGTTTACGCCATGCAGAAGCATGGGCAGCAGAAGCGGGCAAGCGGCGATCCCTACATCTCCCATCCCCTGGAGGTCGCGG CGATCCTGACCGAAATGCATCTCGACGAATCCACGATAGCCGTCGCGCTGCTGCACGACACGATCGAGGATACGACCGCG ACGCGACAGGAAATCGACGGCCTCTTCGGCGAAGATATCGGTGCCTTGGTCGAAGGTCTCACCAAGATCAAGAAACTCGA CCTCGTCACCAAGAAGGCCAAGCAGGCGGAAAATCTGCGCAAGCTGCTGCTCGCTATTTCGGACGACGTCCGCGTCCTCC TGGTCAAGCTCGCCGATCGCCTCCACAATATGCGTACGCTCGATCACATGTCGGCGGAAAAGCGCGCGCGCATTTCGGAG GAGACGATGGACATCTATGCGCCCCTGGCGGGGCGCATGGGCATGCAGGATATGCGCGAGGAGCTTGAAAACCTCTCCTT TCGGCACATCAACCCGGAAGCCTACGAAACCGTCACCAGACGCCTTCAGGAGCTCTCCGAACGTAACGAAGGGCTGATCA AGAAGATCGAGGAGGAACTGAGCGAATTGCTTCAGGCGGAGGGGCTTGCCGATGCCCAGGTCAAGGGGCGCCAGAAGAAG CCTTACTCGGTTTTCCGCAAAATGCAGTCGAAATCGCTTTCCTTCGAGCAGCTCTCGGACGTCTGGGGCTTCCGTATCAT CGTCAGCGACATTCCGGCCTGCTATCGCGCGCTGGGTATCGTGCACACCCGCTGGCGCGTCGTGCCCGGACGCTTCAAGG ACTATATCTCGACGCCGAAGCAGAACGACTATCAATCCATTCATACGACGATCATCGGTCCGTCGCGCCAGCGCATCGAA CTGCAAATCCGCACGAAGCGCATGCATGAGATCGCCGAATACGGTATCGCGGCCCACGCACTCTACAAGGATCGCGACAC TGTTTCCGGCGACCTGACGCGCACACCGACATCGAACGCCTATTCCTGGCTGCGCCGCACGATCGAATCTCTCGCCGAGG GTGATAATCCGGAGGAGTTCCTCGAGCACACCAAGCTCGAACTCTTCCAGGATCAGGTCTTCTGCTTCACTCCGAAGGGG CAGCTGATAGCATTGCCGCGCGGTGCCACCCCGATCGACTTCGCCTATGCCGTGCATACGAATATCGGCGACACCTGCGT CGGGGCCAAGATCAACGGTCGCATCATGCCCCTGGTGACGCGGCTCAACAATGGCGATGAAGTGGAGATCATCCGTTCGG GCATTCAGGTGCCGCCGCCGGCCTGGGAAGAGATCGTCGTCACGGGCAAGGCTCGGGCGGCCATCCGCCGCGCTACTCGC GCCGCGATCCGCAAGCAATATGCCGGCCTCGGCTATCGCATCCTGGAGCGCACTTTCGAACGGGCAGGGAAGACGTTCTC GCGCGAGGCGTTGAAGCCGGTGCTGCATCGGCTCGGGCAAAAGGACGTGGAAGACGCCATCGCTGCGGTAGGACGCGGCG AACTCTCCTCGCTCGACGTTCTGCGCGCCGTCTTCCCGGATCATCAGGACGAGCGCGTGACCGTGAAGCCTAGCGCCGAT GACGGCTGGTTCAACATGCGCAGCGCCGCAGGCATGATCTTCAAGCTGCCGGAGCGGTCGAAGGAAATGGCCGCCGCAGA GCAGGCGGAAGGCCCCGAAGCTCTCCCGATCCGCGGCCTGTCCGGCAATGCCGAGGTCCACTTCAGTCCTGCCGGCGCCG TTCCCGGAGATCGCATCGTCGGTATTATGGACAAGGACAAAGGCATCACCATCTATCCGATCCAGTCGCCGATCCTGCAG CAGTTCGACGAGCAGCCCGAGCGCTGGATCGACGTTCGTTGGGATCTCGACGAGGCGAACAACAGCCGTTTCATTGCCAG AATTGCGGTCAGCGCCTTGAACGAGCCGGGTACGCTGGCGGAGGTCGCACAGGCGATCGCGACCACCGATGTCAACATCC GCTCCCTATCGATGGGGCGCGTCGCGGCTGATTTCAGCGAATTGCAGTTCGACCTCGAAGTCTGGGATCTGCGTCAGCTC AATCACCTGATGGCGCAACTCAAGGAATTGCCAAGCATTTCCATGGTCAAGCGCCTCTTCGAGTAG
Upstream 100 bases:
>100_bases ATAGTTCCGGAACCATAGTTCCGACGCGTTATCGAAGCAGTGCGCCACTCGTGTGATTGGCGCACTTTTTTATTTGCCTG ATTTCAGGAGCCGTCAGCGG
Downstream 100 bases:
>100_bases GGCGTCTGCCGGGCGGCCACGCAGAGATGCTGCTCCTGCAGGCGCGCAAGGATGCGTTCCATTTCCGTGCAGACTGCCTT CAAAATAAGCAGTTAGGGGC
Product: (p)ppGpp synthetase I SpoT/RelA
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase [H]
Number of amino acids: Translated: 741; Mature: 741
Protein sequence:
>741_residues MMRQYELVERVQKYKPDVNEALLNKAYVYAMQKHGQQKRASGDPYISHPLEVAAILTEMHLDESTIAVALLHDTIEDTTA TRQEIDGLFGEDIGALVEGLTKIKKLDLVTKKAKQAENLRKLLLAISDDVRVLLVKLADRLHNMRTLDHMSAEKRARISE ETMDIYAPLAGRMGMQDMREELENLSFRHINPEAYETVTRRLQELSERNEGLIKKIEEELSELLQAEGLADAQVKGRQKK PYSVFRKMQSKSLSFEQLSDVWGFRIIVSDIPACYRALGIVHTRWRVVPGRFKDYISTPKQNDYQSIHTTIIGPSRQRIE LQIRTKRMHEIAEYGIAAHALYKDRDTVSGDLTRTPTSNAYSWLRRTIESLAEGDNPEEFLEHTKLELFQDQVFCFTPKG QLIALPRGATPIDFAYAVHTNIGDTCVGAKINGRIMPLVTRLNNGDEVEIIRSGIQVPPPAWEEIVVTGKARAAIRRATR AAIRKQYAGLGYRILERTFERAGKTFSREALKPVLHRLGQKDVEDAIAAVGRGELSSLDVLRAVFPDHQDERVTVKPSAD DGWFNMRSAAGMIFKLPERSKEMAAAEQAEGPEALPIRGLSGNAEVHFSPAGAVPGDRIVGIMDKDKGITIYPIQSPILQ QFDEQPERWIDVRWDLDEANNSRFIARIAVSALNEPGTLAEVAQAIATTDVNIRSLSMGRVAADFSELQFDLEVWDLRQL NHLMAQLKELPSISMVKRLFE
Sequences:
>Translated_741_residues MMRQYELVERVQKYKPDVNEALLNKAYVYAMQKHGQQKRASGDPYISHPLEVAAILTEMHLDESTIAVALLHDTIEDTTA TRQEIDGLFGEDIGALVEGLTKIKKLDLVTKKAKQAENLRKLLLAISDDVRVLLVKLADRLHNMRTLDHMSAEKRARISE ETMDIYAPLAGRMGMQDMREELENLSFRHINPEAYETVTRRLQELSERNEGLIKKIEEELSELLQAEGLADAQVKGRQKK PYSVFRKMQSKSLSFEQLSDVWGFRIIVSDIPACYRALGIVHTRWRVVPGRFKDYISTPKQNDYQSIHTTIIGPSRQRIE LQIRTKRMHEIAEYGIAAHALYKDRDTVSGDLTRTPTSNAYSWLRRTIESLAEGDNPEEFLEHTKLELFQDQVFCFTPKG QLIALPRGATPIDFAYAVHTNIGDTCVGAKINGRIMPLVTRLNNGDEVEIIRSGIQVPPPAWEEIVVTGKARAAIRRATR AAIRKQYAGLGYRILERTFERAGKTFSREALKPVLHRLGQKDVEDAIAAVGRGELSSLDVLRAVFPDHQDERVTVKPSAD DGWFNMRSAAGMIFKLPERSKEMAAAEQAEGPEALPIRGLSGNAEVHFSPAGAVPGDRIVGIMDKDKGITIYPIQSPILQ QFDEQPERWIDVRWDLDEANNSRFIARIAVSALNEPGTLAEVAQAIATTDVNIRSLSMGRVAADFSELQFDLEVWDLRQL NHLMAQLKELPSISMVKRLFE >Mature_741_residues MMRQYELVERVQKYKPDVNEALLNKAYVYAMQKHGQQKRASGDPYISHPLEVAAILTEMHLDESTIAVALLHDTIEDTTA TRQEIDGLFGEDIGALVEGLTKIKKLDLVTKKAKQAENLRKLLLAISDDVRVLLVKLADRLHNMRTLDHMSAEKRARISE ETMDIYAPLAGRMGMQDMREELENLSFRHINPEAYETVTRRLQELSERNEGLIKKIEEELSELLQAEGLADAQVKGRQKK PYSVFRKMQSKSLSFEQLSDVWGFRIIVSDIPACYRALGIVHTRWRVVPGRFKDYISTPKQNDYQSIHTTIIGPSRQRIE LQIRTKRMHEIAEYGIAAHALYKDRDTVSGDLTRTPTSNAYSWLRRTIESLAEGDNPEEFLEHTKLELFQDQVFCFTPKG QLIALPRGATPIDFAYAVHTNIGDTCVGAKINGRIMPLVTRLNNGDEVEIIRSGIQVPPPAWEEIVVTGKARAAIRRATR AAIRKQYAGLGYRILERTFERAGKTFSREALKPVLHRLGQKDVEDAIAAVGRGELSSLDVLRAVFPDHQDERVTVKPSAD DGWFNMRSAAGMIFKLPERSKEMAAAEQAEGPEALPIRGLSGNAEVHFSPAGAVPGDRIVGIMDKDKGITIYPIQSPILQ QFDEQPERWIDVRWDLDEANNSRFIARIAVSALNEPGTLAEVAQAIATTDVNIRSLSMGRVAADFSELQFDLEVWDLRQL NHLMAQLKELPSISMVKRLFE
Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. Plays a role in ada
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Homo sapiens, GI38348360, Length=137, Percent_Identity=40.1459854014599, Blast_Score=76, Evalue=1e-13, Organism=Escherichia coli, GI1790082, Length=738, Percent_Identity=37.2628726287263, Blast_Score=476, Evalue=1e-135, Organism=Escherichia coli, GI1789147, Length=734, Percent_Identity=30.7901907356948, Blast_Score=362, Evalue=1e-101, Organism=Caenorhabditis elegans, GI25143118, Length=130, Percent_Identity=38.4615384615385, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI24650996, Length=123, Percent_Identity=39.0243902439024, Blast_Score=79, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR003607 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 83621; Mature: 83621
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRQYELVERVQKYKPDVNEALLNKAYVYAMQKHGQQKRASGDPYISHPLEVAAILTEMH CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHH LDESTIAVALLHDTIEDTTATRQEIDGLFGEDIGALVEGLTKIKKLDLVTKKAKQAENLR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLLAISDDVRVLLVKLADRLHNMRTLDHMSAEKRARISEETMDIYAPLAGRMGMQDMRE HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH ELENLSFRHINPEAYETVTRRLQELSERNEGLIKKIEEELSELLQAEGLADAQVKGRQKK HHHCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCC PYSVFRKMQSKSLSFEQLSDVWGFRIIVSDIPACYRALGIVHTRWRVVPGRFKDYISTPK CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHCCCC QNDYQSIHTTIIGPSRQRIELQIRTKRMHEIAEYGIAAHALYKDRDTVSGDLTRTPTSNA CCCHHHHHHEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH YSWLRRTIESLAEGDNPEEFLEHTKLELFQDQVFCFTPKGQLIALPRGATPIDFAYAVHT HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCEEEEEEEC NIGDTCVGAKINGRIMPLVTRLNNGDEVEIIRSGIQVPPPAWEEIVVTGKARAAIRRATR CCCCCEECCEECCEEEEEEEECCCCCHHHHHHCCCCCCCCCCHHEEEECHHHHHHHHHHH AAIRKQYAGLGYRILERTFERAGKTFSREALKPVLHRLGQKDVEDAIAAVGRGELSSLDV HHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH LRAVFPDHQDERVTVKPSADDGWFNMRSAAGMIFKLPERSKEMAAAEQAEGPEALPIRGL HHHHCCCCCCCEEEEECCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHCCCCCCCEEECC SGNAEVHFSPAGAVPGDRIVGIMDKDKGITIYPIQSPILQQFDEQPERWIDVRWDLDEAN CCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHCCCCCEEEEEEECCCCC NSRFIARIAVSALNEPGTLAEVAQAIATTDVNIRSLSMGRVAADFSELQFDLEVWDLRQL CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHEEHHHHHHHHHH NHLMAQLKELPSISMVKRLFE HHHHHHHHHCCCHHHHHHHHC >Mature Secondary Structure MMRQYELVERVQKYKPDVNEALLNKAYVYAMQKHGQQKRASGDPYISHPLEVAAILTEMH CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHH LDESTIAVALLHDTIEDTTATRQEIDGLFGEDIGALVEGLTKIKKLDLVTKKAKQAENLR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLLAISDDVRVLLVKLADRLHNMRTLDHMSAEKRARISEETMDIYAPLAGRMGMQDMRE HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH ELENLSFRHINPEAYETVTRRLQELSERNEGLIKKIEEELSELLQAEGLADAQVKGRQKK HHHCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCC PYSVFRKMQSKSLSFEQLSDVWGFRIIVSDIPACYRALGIVHTRWRVVPGRFKDYISTPK CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHCCCC QNDYQSIHTTIIGPSRQRIELQIRTKRMHEIAEYGIAAHALYKDRDTVSGDLTRTPTSNA CCCHHHHHHEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH YSWLRRTIESLAEGDNPEEFLEHTKLELFQDQVFCFTPKGQLIALPRGATPIDFAYAVHT HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCEEEEEEEC NIGDTCVGAKINGRIMPLVTRLNNGDEVEIIRSGIQVPPPAWEEIVVTGKARAAIRRATR CCCCCEECCEECCEEEEEEEECCCCCHHHHHHCCCCCCCCCCHHEEEECHHHHHHHHHHH AAIRKQYAGLGYRILERTFERAGKTFSREALKPVLHRLGQKDVEDAIAAVGRGELSSLDV HHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHH LRAVFPDHQDERVTVKPSADDGWFNMRSAAGMIFKLPERSKEMAAAEQAEGPEALPIRGL HHHHCCCCCCCEEEEECCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHCCCCCCCEEECC SGNAEVHFSPAGAVPGDRIVGIMDKDKGITIYPIQSPILQQFDEQPERWIDVRWDLDEAN CCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHCCCCCEEEEEEECCCCC NSRFIARIAVSALNEPGTLAEVAQAIATTDVNIRSLSMGRVAADFSELQFDLEVWDLRQL CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHEEHHHHHHHHHH NHLMAQLKELPSISMVKRLFE HHHHHHHHHCCCHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA