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The map label for this gene is 150395273

Identifier: 150395273

GI number: 150395273

Start: 47291

End: 47710

Strand: Direct

Name: 150395273

Synonym: Smed_0045

Alternate gene names: NA

Gene position: 47291-47710 (Clockwise)

Preceding gene: 150395272

Following gene: 150395274

Centisome position: 1.25

GC content: 57.14

Gene sequence:

>420_bases
ATGATTGAGAATAAAAAGAAGCCGAACCCGATCGATATTCATGTCGGTAGCAGGATTCGCCTTCGTCGGACGATGCTTGG
CATGAGCCAGGAGAAGCTCGGCGAGAGTCTGGGGATTACCTTCCAGCAGATCCAGAAGTACGAAAAAGGCACGAACCGCG
TCGGCGCGAGCCGGTTGCAGAACATATCGCAGATACTCAATGTGCCGGTATCGTTCTTCTTCGAGGATGCGCCGGGGGAT
GGCGGCGGCACCGGGCCGGGGATGGCCGAGGCGTCGAGCTCCAATTATGTGGTTGATTTCCTCTCATCCTCGGAAGGTCT
GCAGCTTAACCGCGCCTTCGTCAAGATTTCCGACCCGAAGGTTCGTCGCAAGCTGGTCGACCTCGTAAAGGCTCTGGCCG
CCGAGGCGGAAAGCGAATAG

Upstream 100 bases:

>100_bases
AACCCTTATCTGTCGCCGAGCGCGCCGGGGTTGCTGTGGCGCAAAAGAAGACAATTCTAGGTTGTTGGACAATAATAACA
GCGTGTTTAGGAAGGCGAAT

Downstream 100 bases:

>100_bases
GCCGCCAAAGGGGATGTGCGTGCGGCTTTCAGCCCGTGCTCCGCGTCTCAACTCTTTGGAATCGATCACGTTCATGTTTT
AGTCAGCCCGACCCAGGAAC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQNISQILNVPVSFFFEDAPGD
GGGTGPGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKLVDLVKALAAEAESE

Sequences:

>Translated_139_residues
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQNISQILNVPVSFFFEDAPGD
GGGTGPGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKLVDLVKALAAEAESE
>Mature_139_residues
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQNISQILNVPVSFFFEDAPGD
GGGTGPGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKLVDLVKALAAEAESE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y045_SINMW (A6U5H5)

Other databases:

- EMBL:   L13845
- EMBL:   CP000738
- RefSeq:   YP_001325740.1
- ProteinModelPortal:   A6U5H5
- SMR:   A6U5H5
- STRING:   A6U5H5
- GeneID:   5320872
- GenomeReviews:   CP000738_GR
- KEGG:   smd:Smed_0045
- eggNOG:   COG1396
- HOGENOM:   HBG730058
- OMA:   VDKHVGS
- ProtClustDB:   CLSK864326
- BioCyc:   SMED366394:SMED_0045-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 15210; Mature: 15210

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ
CCCCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
NISQILNVPVSFFFEDAPGDGGGTGPGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK
HHHHHHHCCHHEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCHH
VRRKLVDLVKALAAEAESE
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ
CCCCCCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
NISQILNVPVSFFFEDAPGDGGGTGPGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK
HHHHHHHCCHHEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCHH
VRRKLVDLVKALAAEAESE
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435