| Definition | Haemophilus influenzae PittGG chromosome, complete genome. |
|---|---|
| Accession | NC_009567 |
| Length | 1,887,192 |
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The map label for this gene is rne [H]
Identifier: 148827613
GI number: 148827613
Start: 957181
End: 959988
Strand: Direct
Name: rne [H]
Synonym: CGSHiGG_05250
Alternate gene names: 148827613
Gene position: 957181-959988 (Clockwise)
Preceding gene: 148827610
Following gene: 148827614
Centisome position: 50.72
GC content: 40.67
Gene sequence:
>2808_bases ATGAAAAGAATGTTAATCAATGCAACTCAAAAAGAAGAGTTGCGTGTTGCGCTTGTCGATGGACAACGCCTTTTTGACTT GGACATTGAAAGCCCAGGACACGAACAAAAAAAAGCGAATATCTACAAAGGAACAATTACTCGCGTTGAGCCAAGCTTAG AAGCGGCTTTTGTAGATTATGGTGCAGAACGTCACGGTTTTTTACCTTTAAAAGAAATTGCCCGTGAATATTTTCCTGAT GATTATGTTTTTCAAGGTCGTCCGAATATTCGCGATATTTTGACCGAAGGACAGGAAGTTATCGTTCAAGTTAATAAAGA AGAAAGAGGAAACAAAGGTGCAGCCTTAACTACTTTTGTTTCTCTTGCTGGCAGTTATTTGGTGCTTATGCCGAATAATC CACGGGCAGGAGGAATTTCTCGCCGTATTGAGGGCGATGAACGTACTGAACTAAAAGAAGCATTAAGTTCATTAGATGTG CCTGAAGGTGTAGGCTTAATCGTCCGTACTGCTGGTGTGGGAAAATCGCCAGAAGAATTACAATGGGATTTAAAAGTATT ATTACATCATTGGGAAGCGATCAAACAAGCTTCACAAAGTCGTCCAGCTCCATTTTTAATTCATCAAGAAAGCGATGTGA TTGTACGCGCTATTCGCGATTATTTGCGTCGTGATATTGGTGAGATCCTGATTGATAGCCCAAAAATTTTTGAGAAAGCG AAAGAGCATATCAAACTTGTGCGTCCTGATTTCATCAATCGCGTGAAACTTTATCAAGGCGAAGTGCCACTTTTCAGTCA CTATCAAATTGAATCTCAAATTGAATCCGCATTCCAACGTGAAGTGCGTTTACCTTCTGGCGGTTCAATCGTTATTGATG TAACTGAAGCATTAACCGCCATTGATATTAACTCCGCACGTTCTACTCGTGGTGGCGATATTGAAGAAACCGCATTAAAT ACCAACCTTGAAGCGGCAGATGAAATCGCGCGTCAATTACGCTTACGTGACTTAGGTGGATTAGTTGTCATTGATTTCAT TGATATGACACCAATTCGCCATCAACGTGAAGTAGAAAATCGTATTCGTGATGCGGTTCGTCCAGATCGTGCCCGTATTC AAATTAGCCGAATTTCTCGTTTTGGTTTGTTAGAAATGTCACGTCAGCGTTTAAGCCCATCATTGGGCGAATCTTCGCAC CATATTTGCCCTCGTTGTCAAGGAACAGGCAAAGTGCGTGATAATGAATCTCTTTCTTTATCTATTTTACGTTTGCTGGA AGAAGAAGCATTAAAAGAGAACACCAAGCAAGTACATACCATTGTGCCAGTACAAATTGCCTCTTATCTTCTTAACGAAA AACGCAAAGCAATCAGTAATATTGAAAAGCGTCATAATGTCGATATTATTGTTGCCCCAAATGAAGCAATGGAAACACCG CACTTTAGTGTTTTCCGTTTACGTGATGGCGAAGAAGTAAATGAATTAAGCTATAACTTAGCGAAAATTCACTGCGCTCA AGATGAAAATACTGAAGAATCACTGCTTTCTCGTAATGTGGAAACAACAGCTGTTATTGAACAACCAGCGGTTGAAAGTG CAGTAGTTGCACTTTCTATTTCAGAAGCAGCCCCAACGCCAGTTGAGCGTAAATCAAATGAACCCTCTTTGTTAGCTAAA ATTATTGCGAAAATTAAAGGTTTATTTGCGACTAAATCTGAAGAAAACAAACCGAAAAATAACCGCACTTCGCGCAATCC TAATCGTAATCAACGCCGTTCACAGGATCGTCGTTCTTCTCGTCGTCCACGTTCTGAAAATAACGAAACAGAAAGAACCG AAGAACAGGTTCGTAATGTCCGTGAGCGTAATCAACGCCGTCCGCGCCGTAACTTAGTGGAAGAAAGTATCGCTGAAAGT GCGGTAAATTCTACACCTGTTTTTGAGGCTAAAGAAGAAAGAACTGAGCCTGTAACTCAACGCCGCCAACGCCGTGATTT ACGTAAACGCGTGCGCGTTGAAGATAATGAAACAGTTGTTGAAAATAACTTCAGCACGACTGAAAAAATGCCAGAAGTGG ATGTAATTACGGTTCAAAATAATGATGAAAAACCCGTTCATCAGAACCAACGTTCTGAACGTCAAGAGCGTCAGCGTCGT ACTCCACGTCATTTACGTGCAGCGAATAATCAGCGTCGTCGCCGTAATCAAGAGCCAAAATCGCCAATGCCATTATTTGC TGCGGTGGTTTCGCCTGAATTGGCAAGTGGCAAGGCTTGGATTGATTATTCAACGGTAAATCTGCCAAAAGAAAATCATT TCTTATCTGTGGATGAATTGCTTGAGCAAGAGAAAACTAAAAAAGGATTTATCACGCCAGCAATGGGAATTGTCGTTGAA GAAAAATCCCCTGATGTAAAACCTGCATTAGATTTTATTACTCAACCAGCTAATGAATCGGTACAGAAAAAAGTACAAGA ATCTTTAGACCGTTTAAGTTCGTATAAACCTCAAGAAGTTGTTGAATCTATTGATCCAGCAATTAATGTAGATGAACCTG AAACGCTCGAGAAAGTATCAAAATTTGTCCGCACTTATGAATTTAATGGACGTTTAGGTACAATTTCTTCAGTACCCCAT ACAAAAGCGGAGATGACTTTAGCGAAAGCAAATGATGAAATGCCAGAGGCTTTCCCAATTAGGGCTTGGCAGGATTCTCG TTATTATTTCTATGGAAAAGGTGCGGCAGGACATCATTGTGCAATTAGCCACGTTTATTCTGAACCAACCCGCGCAAAAT CAGAATAA
Upstream 100 bases:
>100_bases ACAGTCGTGAGATTGACTGGCGCGAGAAACACGAGGTCGATAACGAAACAAAGTGCGGTTTATTTTGAGGTTTTTTAAAT ATTTAATAAGAGAATTGACA
Downstream 100 bases:
>100_bases TCAAAAATAAAAATAGAATTGACGTAACCAAAATTACGTCAATTCTTTTTATTTTTAACAAAAATCCTTTGGAAGAACCC TAATGAATATTCGAATTGAG
Product: ribonuclease E
Products: NA
Alternate protein names: RNase E [H]
Number of amino acids: Translated: 935; Mature: 935
Protein sequence:
>935_residues MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLKEIAREYFPD DYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDV PEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA KEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTRGGDIEETALN TNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSH HICPRCQGTGKVRDNESLSLSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETP HFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVERKSNEPSLLAK IIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAES AVNSTPVFEAKEERTEPVTQRRQRRDLRKRVRVEDNETVVENNFSTTEKMPEVDVITVQNNDEKPVHQNQRSERQERQRR TPRHLRAANNQRRRRNQEPKSPMPLFAAVVSPELASGKAWIDYSTVNLPKENHFLSVDELLEQEKTKKGFITPAMGIVVE EKSPDVKPALDFITQPANESVQKKVQESLDRLSSYKPQEVVESIDPAINVDEPETLEKVSKFVRTYEFNGRLGTISSVPH TKAEMTLAKANDEMPEAFPIRAWQDSRYYFYGKGAAGHHCAISHVYSEPTRAKSE
Sequences:
>Translated_935_residues MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLKEIAREYFPD DYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDV PEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA KEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTRGGDIEETALN TNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSH HICPRCQGTGKVRDNESLSLSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETP HFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVERKSNEPSLLAK IIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAES AVNSTPVFEAKEERTEPVTQRRQRRDLRKRVRVEDNETVVENNFSTTEKMPEVDVITVQNNDEKPVHQNQRSERQERQRR TPRHLRAANNQRRRRNQEPKSPMPLFAAVVSPELASGKAWIDYSTVNLPKENHFLSVDELLEQEKTKKGFITPAMGIVVE EKSPDVKPALDFITQPANESVQKKVQESLDRLSSYKPQEVVESIDPAINVDEPETLEKVSKFVRTYEFNGRLGTISSVPH TKAEMTLAKANDEMPEAFPIRAWQDSRYYFYGKGAAGHHCAISHVYSEPTRAKSE >Mature_935_residues MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAERHGFLPLKEIAREYFPD DYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDV PEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA KEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARSTRGGDIEETALN TNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSH HICPRCQGTGKVRDNESLSLSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETP HFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSISEAAPTPVERKSNEPSLLAK IIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSSRRPRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAES AVNSTPVFEAKEERTEPVTQRRQRRDLRKRVRVEDNETVVENNFSTTEKMPEVDVITVQNNDEKPVHQNQRSERQERQRR TPRHLRAANNQRRRRNQEPKSPMPLFAAVVSPELASGKAWIDYSTVNLPKENHFLSVDELLEQEKTKKGFITPAMGIVVE EKSPDVKPALDFITQPANESVQKKVQESLDRLSSYKPQEVVESIDPAINVDEPETLEKVSKFVRTYEFNGRLGTISSVPH TKAEMTLAKANDEMPEAFPIRAWQDSRYYFYGKGAAGHHCAISHVYSEPTRAKSE
Specific function: Matures 5S rRNA from its precursors from all the rRNA genes. Major endoribonuclease participating in mRNA turnover. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic proce
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI1787325, Length=506, Percent_Identity=82.0158102766798, Blast_Score=872, Evalue=0.0, Organism=Escherichia coli, GI87082235, Length=429, Percent_Identity=35.4312354312354, Blast_Score=230, Evalue=3e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR021968 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF12111 PNPase_C; PF10150 RNase_E_G; PF00575 S1 [H]
EC number: =3.1.26.12 [H]
Molecular weight: Translated: 106500; Mature: 106500
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDY CCCCEECCCCCCCEEEEEECCCEEEEECCCCCCCHHHHCCCEECEEEEECCCHHHHHHHC GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFV CCCCCCCCCHHHHHHHHCCCCCEECCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEEL HHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH KEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA HHHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHH IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVEN EECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHH RIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSL HHHHHCCCCHHEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH SILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETP HHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCCC HFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSI CCEEEEECCCCHHHHHHHHHHEEEECCCCCHHHHHHHCCCCHHEEECCCCHHHEEEEEEE SEAAPTPVERKSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSS CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH RRPRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHH RRQRRDLRKRVRVEDNETVVENNFSTTEKMPEVDVITVQNNDEKPVHQNQRSERQERQRR HHHHHHHHHHCCCCCCCEEEECCCCCHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHC TPRHLRAANNQRRRRNQEPKSPMPLFAAVVSPELASGKAWIDYSTVNLPKENHFLSVDEL CHHHHHHHCHHHHHCCCCCCCCCHHHHHHHCCHHCCCCEEEEEEEECCCCCCCEECHHHH LEQEKTKKGFITPAMGIVVEEKSPDVKPALDFITQPANESVQKKVQESLDRLSSYKPQEV HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHH VESIDPAINVDEPETLEKVSKFVRTYEFNGRLGTISSVPHTKAEMTLAKANDEMPEAFPI HHHCCCCCCCCCCHHHHHHHHHHHHEECCCCEECCCCCCCCHHHEEEECCCCCCCCCCCC RAWQDSRYYFYGKGAAGHHCAISHVYSEPTRAKSE EEEECCEEEEEECCCCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDY CCCCEECCCCCCCEEEEEECCCEEEEECCCCCCCHHHHCCCEECEEEEECCCHHHHHHHC GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDILTEGQEVIVQVNKEERGNKGAALTTFV CCCCCCCCCHHHHHHHHCCCCCEECCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEEL HHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH KEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA HHHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHH IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVEN EECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHH RIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSL HHHHHCCCCHHEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH SILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAMETP HHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCCC HFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVALSI CCEEEEECCCCHHHHHHHHHHEEEECCCCCHHHHHHHCCCCHHEEECCCCHHHEEEEEEE SEAAPTPVERKSNEPSLLAKIIAKIKGLFATKSEENKPKNNRTSRNPNRNQRRSQDRRSS CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH RRPRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQ CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHH RRQRRDLRKRVRVEDNETVVENNFSTTEKMPEVDVITVQNNDEKPVHQNQRSERQERQRR HHHHHHHHHHCCCCCCCEEEECCCCCHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHC TPRHLRAANNQRRRRNQEPKSPMPLFAAVVSPELASGKAWIDYSTVNLPKENHFLSVDEL CHHHHHHHCHHHHHCCCCCCCCCHHHHHHHCCHHCCCCEEEEEEEECCCCCCCEECHHHH LEQEKTKKGFITPAMGIVVEEKSPDVKPALDFITQPANESVQKKVQESLDRLSSYKPQEV HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHH VESIDPAINVDEPETLEKVSKFVRTYEFNGRLGTISSVPHTKAEMTLAKANDEMPEAFPI HHHCCCCCCCCCCHHHHHHHHHHHHEECCCCEECCCCCCCCHHHEEEECCCCCCCCCCCC RAWQDSRYYFYGKGAAGHHCAISHVYSEPTRAKSE EEEECCEEEEEECCCCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]