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The map label for this gene is oppA [H]

Identifier: 148651837

GI number: 148651837

Start: 29321

End: 30997

Strand: Direct

Name: oppA [H]

Synonym: PsycPRwf_0020

Alternate gene names: 148651837

Gene position: 29321-30997 (Clockwise)

Preceding gene: 148651836

Following gene: 148651838

Centisome position: 0.98

GC content: 47.05

Gene sequence:

>1677_bases
ATGGTCTCATCTTCGCGCAGGACTTTAAAAGCACTCCCTTCAATCACCTTAACTGCGGCGATAACCACTGCCGTTTTTTT
AAGTGGCTGTGGCGACAAGGAGGCCAGTAATGCTGGGGCCTCAGCTAAGATAGACCCTAATGTCTTGGCCGAAAAACAGC
AGATTGTTATTAACAATGGCACTGAGCCTGAGTCGCTTGATCCGCATAAGATATCCGGCCTACCTGAAGCCAATATTATC
CGTCAGCAGCTGGTGGGGCTCGTCACTACTGATGCTAAAGGTAAGACCATTGCTGCGATGGCTAAGAGCTGGCAGAGTGA
AGATAACAAGGTTTGGGTGTTTAAACTGCGTGATGCCAAATGGTCAAATGGCGATCCTGTGACCGCACAAGACTTCGTCT
ATAGCTTACGCCGAGTGGTGGATCCTAAGACCGCATCACCATATGGCAACTACTTGGTCGATGCCAAAGTGGTGGGCGCT
GAAGCCATCATCAATGGTAAGCAAAGCCCAGATACGTTAGGTGTTAAAGCTTTGGATAATAAAACCTTAGAGGTGAGATT
AACTGAGCCGGTACCTTACTTTGTCGATATGCTGATACATACCTCAACCTCTCCGGTACATCCGGCCACGGTTGAAAAAT
TTGGGGTGAAATGGACCGATCCTAAGAACATAGTGGTCAATGGCCCTTATAAAATTAGCGAGTGGTCGGTCAATGACAAG
ATAGTGCTGCAGCGTAATCCGGCCTATTACGACAATGCCCACACCACCATAGATACCATTACTTTACTGCCGATTGAGTC
GGAGACCACCAATGTGGCCCGTTATAAAGCGGGTGAAATTGATATTGGTGCCGGCATGCCAACTGAGCAGTTTGATGAAT
TAAAAGCAGAGCTGGGTGATCAAATTCAAGTCTCACCAAGCTTGTGCAGTTTTTATTATCAGTACAACAACAAAAAGCCA
CCTTTTGACGATGTGCGGGTGCGCCGAGCGCTGGCCATCGCCTTAGATCGCGATACCATCACCCAAAAAGTGATGGGACA
AGGTCAAACGCCAGCGTATCAATACACGCCGCCGTCGATTCAAGGAATGACCCCTTTTACACCTGAGTGGCAAAGCTGGG
ATCAGAAAAAACGGGTTACAGAGGCCAAAAAGCTACTCAATGAAGCCGGCTACAACGAGCAGCATCCGCTGAAGTTTGAG
TTGTTGTACAACACCAATGAAGGCAATAAAAAGCTGGCTGTGGCCACAAGCTCGCTACTAAAAGAGGCCATTGGCTTTGT
CGATGTGAGCCTAATGAACAAAGAGTGGAAAACCTTTTTGGACACCTTTCGTAATGGTAATTATCAGCTGGCACGCTATA
CCTGGTGTGGCGATTATAACGAGCCATCTACCTTTTTGAATATTGCCAAGAGCGGTAATAGTAATAACTGGGGCGGTTAT
TCTAGTGTTAAGTTTGACAGCATTATGAATCAAACGCTCAAAGAGGGCGTGACCGCCGAGCAGCGAGCAGAGCTGTATCG
TCAAGCGGAAGCTCAGCTCGATGCTGATATGCCACAGCTTAATGTATTCCATATCGTCAAGCTCAGCATGGTTAAGCCTT
ATGTGATCAATTTTCCTTTGCAAGATCCTTTGAGCAATTGGCAGATTAAGGATGTCTCTATCGCCAAGCATGACTAA

Upstream 100 bases:

>100_bases
CATCCTCATTAAATAGACAAACGGATAAGTCGACACTCAAGCGGCTTATCCGGTATTGATTTTAGCGATGGCCAATGTGA
CAACTAATAAGGATATAAGT

Downstream 100 bases:

>100_bases
AAAGAGTGGCTGCGATGAGGGTTGGATTTGGTATTAATAAAAGTGATTAAATTATGAAGATTTTAAGTCGTACAACATTA
CCGACACGCTTGCCACTGGT

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MVSSSRRTLKALPSITLTAAITTAVFLSGCGDKEASNAGASAKIDPNVLAEKQQIVINNGTEPESLDPHKISGLPEANII
RQQLVGLVTTDAKGKTIAAMAKSWQSEDNKVWVFKLRDAKWSNGDPVTAQDFVYSLRRVVDPKTASPYGNYLVDAKVVGA
EAIINGKQSPDTLGVKALDNKTLEVRLTEPVPYFVDMLIHTSTSPVHPATVEKFGVKWTDPKNIVVNGPYKISEWSVNDK
IVLQRNPAYYDNAHTTIDTITLLPIESETTNVARYKAGEIDIGAGMPTEQFDELKAELGDQIQVSPSLCSFYYQYNNKKP
PFDDVRVRRALAIALDRDTITQKVMGQGQTPAYQYTPPSIQGMTPFTPEWQSWDQKKRVTEAKKLLNEAGYNEQHPLKFE
LLYNTNEGNKKLAVATSSLLKEAIGFVDVSLMNKEWKTFLDTFRNGNYQLARYTWCGDYNEPSTFLNIAKSGNSNNWGGY
SSVKFDSIMNQTLKEGVTAEQRAELYRQAEAQLDADMPQLNVFHIVKLSMVKPYVINFPLQDPLSNWQIKDVSIAKHD

Sequences:

>Translated_558_residues
MVSSSRRTLKALPSITLTAAITTAVFLSGCGDKEASNAGASAKIDPNVLAEKQQIVINNGTEPESLDPHKISGLPEANII
RQQLVGLVTTDAKGKTIAAMAKSWQSEDNKVWVFKLRDAKWSNGDPVTAQDFVYSLRRVVDPKTASPYGNYLVDAKVVGA
EAIINGKQSPDTLGVKALDNKTLEVRLTEPVPYFVDMLIHTSTSPVHPATVEKFGVKWTDPKNIVVNGPYKISEWSVNDK
IVLQRNPAYYDNAHTTIDTITLLPIESETTNVARYKAGEIDIGAGMPTEQFDELKAELGDQIQVSPSLCSFYYQYNNKKP
PFDDVRVRRALAIALDRDTITQKVMGQGQTPAYQYTPPSIQGMTPFTPEWQSWDQKKRVTEAKKLLNEAGYNEQHPLKFE
LLYNTNEGNKKLAVATSSLLKEAIGFVDVSLMNKEWKTFLDTFRNGNYQLARYTWCGDYNEPSTFLNIAKSGNSNNWGGY
SSVKFDSIMNQTLKEGVTAEQRAELYRQAEAQLDADMPQLNVFHIVKLSMVKPYVINFPLQDPLSNWQIKDVSIAKHD
>Mature_558_residues
MVSSSRRTLKALPSITLTAAITTAVFLSGCGDKEASNAGASAKIDPNVLAEKQQIVINNGTEPESLDPHKISGLPEANII
RQQLVGLVTTDAKGKTIAAMAKSWQSEDNKVWVFKLRDAKWSNGDPVTAQDFVYSLRRVVDPKTASPYGNYLVDAKVVGA
EAIINGKQSPDTLGVKALDNKTLEVRLTEPVPYFVDMLIHTSTSPVHPATVEKFGVKWTDPKNIVVNGPYKISEWSVNDK
IVLQRNPAYYDNAHTTIDTITLLPIESETTNVARYKAGEIDIGAGMPTEQFDELKAELGDQIQVSPSLCSFYYQYNNKKP
PFDDVRVRRALAIALDRDTITQKVMGQGQTPAYQYTPPSIQGMTPFTPEWQSWDQKKRVTEAKKLLNEAGYNEQHPLKFE
LLYNTNEGNKKLAVATSSLLKEAIGFVDVSLMNKEWKTFLDTFRNGNYQLARYTWCGDYNEPSTFLNIAKSGNSNNWGGY
SSVKFDSIMNQTLKEGVTAEQRAELYRQAEAQLDADMPQLNVFHIVKLSMVKPYVINFPLQDPLSNWQIKDVSIAKHD

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=546, Percent_Identity=52.014652014652, Blast_Score=547, Evalue=1e-157,
Organism=Escherichia coli, GI87081878, Length=545, Percent_Identity=39.6330275229358, Blast_Score=414, Evalue=1e-116,
Organism=Escherichia coli, GI1789397, Length=511, Percent_Identity=39.5303326810176, Blast_Score=378, Evalue=1e-106,
Organism=Escherichia coli, GI1787762, Length=508, Percent_Identity=26.1811023622047, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787052, Length=345, Percent_Identity=27.2463768115942, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789966, Length=534, Percent_Identity=23.5955056179775, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1789887, Length=482, Percent_Identity=24.4813278008299, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1787551, Length=502, Percent_Identity=24.5019920318725, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62202; Mature: 62202

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSSSRRTLKALPSITLTAAITTAVFLSGCGDKEASNAGASAKIDPNVLAEKQQIVINNG
CCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECC
TEPESLDPHKISGLPEANIIRQQLVGLVTTDAKGKTIAAMAKSWQSEDNKVWVFKLRDAK
CCCCCCCCHHCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCC
WSNGDPVTAQDFVYSLRRVVDPKTASPYGNYLVDAKVVGAEAIINGKQSPDTLGVKALDN
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECHHHEECCCCCCCCCCEEEECC
KTLEVRLTEPVPYFVDMLIHTSTSPVHPATVEKFGVKWTDPKNIVVNGPYKISEWSVNDK
CEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHCCEECCCCCEEEECCEEEEEECCCCE
IVLQRNPAYYDNAHTTIDTITLLPIESETTNVARYKAGEIDIGAGMPTEQFDELKAELGD
EEEECCCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCEEECCCCCHHHHHHHHHHCCC
QIQVSPSLCSFYYQYNNKKPPFDDVRVRRALAIALDRDTITQKVMGQGQTPAYQYTPPSI
CEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHEEECHHHHHHHHHCCCCCCCEEECCCCC
QGMTPFTPEWQSWDQKKRVTEAKKLLNEAGYNEQHPLKFELLYNTNEGNKKLAVATSSLL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHHH
KEAIGFVDVSLMNKEWKTFLDTFRNGNYQLARYTWCGDYNEPSTFLNIAKSGNSNNWGGY
HHHHHHEEEEHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHEEEEECCCCCCCCCC
SSVKFDSIMNQTLKEGVTAEQRAELYRQAEAQLDADMPQLNVFHIVKLSMVKPYVINFPL
CCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCEEEECCC
QDPLSNWQIKDVSIAKHD
CCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MVSSSRRTLKALPSITLTAAITTAVFLSGCGDKEASNAGASAKIDPNVLAEKQQIVINNG
CCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECC
TEPESLDPHKISGLPEANIIRQQLVGLVTTDAKGKTIAAMAKSWQSEDNKVWVFKLRDAK
CCCCCCCCHHCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCC
WSNGDPVTAQDFVYSLRRVVDPKTASPYGNYLVDAKVVGAEAIINGKQSPDTLGVKALDN
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECHHHEECCCCCCCCCCEEEECC
KTLEVRLTEPVPYFVDMLIHTSTSPVHPATVEKFGVKWTDPKNIVVNGPYKISEWSVNDK
CEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHCCEECCCCCEEEECCEEEEEECCCCE
IVLQRNPAYYDNAHTTIDTITLLPIESETTNVARYKAGEIDIGAGMPTEQFDELKAELGD
EEEECCCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCEEECCCCCHHHHHHHHHHCCC
QIQVSPSLCSFYYQYNNKKPPFDDVRVRRALAIALDRDTITQKVMGQGQTPAYQYTPPSI
CEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHEEECHHHHHHHHHCCCCCCCEEECCCCC
QGMTPFTPEWQSWDQKKRVTEAKKLLNEAGYNEQHPLKFELLYNTNEGNKKLAVATSSLL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHHH
KEAIGFVDVSLMNKEWKTFLDTFRNGNYQLARYTWCGDYNEPSTFLNIAKSGNSNNWGGY
HHHHHHEEEEHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHEEEEECCCCCCCCCC
SSVKFDSIMNQTLKEGVTAEQRAELYRQAEAQLDADMPQLNVFHIVKLSMVKPYVINFPL
CCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCEEEECCC
QDPLSNWQIKDVSIAKHD
CCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187863; 9097039; 9278503; 2015910; 9298646; 9600841 [H]