Click here to switch to the map view.

The map label for this gene is oppA [H]

Identifier: 148651836

GI number: 148651836

Start: 27558

End: 29159

Strand: Direct

Name: oppA [H]

Synonym: PsycPRwf_0019

Alternate gene names: 148651836

Gene position: 27558-29159 (Clockwise)

Preceding gene: 148651832

Following gene: 148651837

Centisome position: 0.93

GC content: 47.0

Gene sequence:

>1602_bases
ATGATGATGGTCGGATGTGGTGATAAATCAGCCAGCAGTGGCAGTTCAGCCAAAGTAGACCCCAATGTTTTAGCCGATAA
GCAAGAGCTGGTTATTAATAACGCAGCTGAGCCTGAGTCATTAGACCCACAAAAAGTCTCTGGGGTACCAGAAGCGGCAG
TCATTCGTCAAATGCTGGTGGGTCTAACCACCACAGACCGAGATGGCAAAACCATTCCTGGCATGGCCGAAAGCTGGGAG
AGCACAGACAATAAAGTTTGGACCTTTAAAATTCGTGATGCCAAATGGTCAAACGGTGACCCGGTTACTGCCAATGACTT
CGTGTACAGCTGGCGCCGTCTGTTAGATCCCAATACAGCATCCCCTTATGCCAGTTACTTAGTCGATGCCAAAGTGGCGG
GCGCTGAGGCCATCATGGAAGGTAAAGCTGCGGTAGATAGCTTAGGGGTTAAAGCCCTTGATGATAAAACCTTACAAGTG
ACTTTATCAGAGCCTGTGCCTTATTTCCCAGACACTTTAATCCATACCTCTGTAAAACCTGTGAACCAAAAAGCGGTAGA
GCAGTTCGGTGATAAATGGACCGATCCGGCCAATATCGTGGTCAACGGCCCATACAAAATTAGCGAATGGCAGGTCAACG
ACAAGATTGTGTTAACCCGTAACGAGAGCTACTACGACAATGCCAACACCACCCTAGAAAAAATTACCATGTTGGCCATC
CCCTCTAGCACCACCGACGTGGCACGCTATCAGGCTGGTGAGATTGATGTGACGAATGAAGAATTGCCCTCAGAGCAGTT
CAAGTCTTTAAAAGAGCAGTTGGGTGATGAGGTAAGCGTATCGCCTATGCTATGTACTTACTACTACGAGTTTAATACCG
TTAAGCCGCCATTTAATGATGCGCGCGTCCGCCGTGCTCTGGCCTTAGCGTTAGACCGTAACACCATTACCGATAAGGTC
GTCGGACAAGGTCAGACGCCCGCTTATCAGTTAACTCCAGTATCGACCAATGGCATGGAAAACAACACACCTGAATGGCA
AAACTGGGATCAAGCACGCCGTGTAGAAGAGGCGAAGAAGCTACTTAATGAGGCCGGATATAGCGAATCTAAGCCCCTAA
AATTTGAGCTGTTATATAACACCAGTGACAACCACAAGAAAATCGCTGTCGCGGCAAGCTCGTTATGGAAGCAGTCACTT
GGTTTCGTTGACGTAAGCTTAATTAACAAAGAGTGGAAAACCTATCTAGATACGCGCCGCAATGGTAACTATCAAGTGGC
CCGTGCGGGCTGGTGTGGCGATTATAACGAGCCTTCTACCTTCTTAAATATCGTCAAATCTGGCAACAGTAATAACCAAG
GTAAGTACTCAAGTGCCGCCTTTGATAGCTTGATGACTCAAACCTTAAAAGCGGGCGTTACCCCAGAGCAGCGTGCTAAC
TTGTACAAACAAGCAGAAGTGCAGCTTGACAAAGACATGCCAAATATCAACGTCTACCACTATGTAAGCCCTCGTCTTAT
CAAGCCTTATGTGGTCGGCTTCCCAGTTAATGATCCTTTAAACAACTGGCAAGGTAAAGATCTAAAAATCGCTAAGCATT
AA

Upstream 100 bases:

>100_bases
ATGAAAGCTTATATTTGCCATTGCCCAAAAGGATTTTATTGTGCGTAAATCAACCTCTTTAGTGAATACAGTTTTTCTTC
CAACCACGTTAGCCTTAGCG

Downstream 100 bases:

>100_bases
TCACTGATAGGCTTATTGCGACATTTAGCGTCCCTGAGCGCCAGCCGTCTTCGGCTGGCCGCATCCTCATTAAATAGACA
AACGGATAAGTCGACACTCA

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MMMVGCGDKSASSGSSAKVDPNVLADKQELVINNAAEPESLDPQKVSGVPEAAVIRQMLVGLTTTDRDGKTIPGMAESWE
STDNKVWTFKIRDAKWSNGDPVTANDFVYSWRRLLDPNTASPYASYLVDAKVAGAEAIMEGKAAVDSLGVKALDDKTLQV
TLSEPVPYFPDTLIHTSVKPVNQKAVEQFGDKWTDPANIVVNGPYKISEWQVNDKIVLTRNESYYDNANTTLEKITMLAI
PSSTTDVARYQAGEIDVTNEELPSEQFKSLKEQLGDEVSVSPMLCTYYYEFNTVKPPFNDARVRRALALALDRNTITDKV
VGQGQTPAYQLTPVSTNGMENNTPEWQNWDQARRVEEAKKLLNEAGYSESKPLKFELLYNTSDNHKKIAVAASSLWKQSL
GFVDVSLINKEWKTYLDTRRNGNYQVARAGWCGDYNEPSTFLNIVKSGNSNNQGKYSSAAFDSLMTQTLKAGVTPEQRAN
LYKQAEVQLDKDMPNINVYHYVSPRLIKPYVVGFPVNDPLNNWQGKDLKIAKH

Sequences:

>Translated_533_residues
MMMVGCGDKSASSGSSAKVDPNVLADKQELVINNAAEPESLDPQKVSGVPEAAVIRQMLVGLTTTDRDGKTIPGMAESWE
STDNKVWTFKIRDAKWSNGDPVTANDFVYSWRRLLDPNTASPYASYLVDAKVAGAEAIMEGKAAVDSLGVKALDDKTLQV
TLSEPVPYFPDTLIHTSVKPVNQKAVEQFGDKWTDPANIVVNGPYKISEWQVNDKIVLTRNESYYDNANTTLEKITMLAI
PSSTTDVARYQAGEIDVTNEELPSEQFKSLKEQLGDEVSVSPMLCTYYYEFNTVKPPFNDARVRRALALALDRNTITDKV
VGQGQTPAYQLTPVSTNGMENNTPEWQNWDQARRVEEAKKLLNEAGYSESKPLKFELLYNTSDNHKKIAVAASSLWKQSL
GFVDVSLINKEWKTYLDTRRNGNYQVARAGWCGDYNEPSTFLNIVKSGNSNNQGKYSSAAFDSLMTQTLKAGVTPEQRAN
LYKQAEVQLDKDMPNINVYHYVSPRLIKPYVVGFPVNDPLNNWQGKDLKIAKH
>Mature_533_residues
MMMVGCGDKSASSGSSAKVDPNVLADKQELVINNAAEPESLDPQKVSGVPEAAVIRQMLVGLTTTDRDGKTIPGMAESWE
STDNKVWTFKIRDAKWSNGDPVTANDFVYSWRRLLDPNTASPYASYLVDAKVAGAEAIMEGKAAVDSLGVKALDDKTLQV
TLSEPVPYFPDTLIHTSVKPVNQKAVEQFGDKWTDPANIVVNGPYKISEWQVNDKIVLTRNESYYDNANTTLEKITMLAI
PSSTTDVARYQAGEIDVTNEELPSEQFKSLKEQLGDEVSVSPMLCTYYYEFNTVKPPFNDARVRRALALALDRNTITDKV
VGQGQTPAYQLTPVSTNGMENNTPEWQNWDQARRVEEAKKLLNEAGYSESKPLKFELLYNTSDNHKKIAVAASSLWKQSL
GFVDVSLINKEWKTYLDTRRNGNYQVARAGWCGDYNEPSTFLNIVKSGNSNNQGKYSSAAFDSLMTQTLKAGVTPEQRAN
LYKQAEVQLDKDMPNINVYHYVSPRLIKPYVVGFPVNDPLNNWQGKDLKIAKH

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=512, Percent_Identity=56.8359375, Blast_Score=596, Evalue=1e-171,
Organism=Escherichia coli, GI87081878, Length=515, Percent_Identity=45.4368932038835, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1789397, Length=527, Percent_Identity=42.5047438330171, Blast_Score=410, Evalue=1e-115,
Organism=Escherichia coli, GI1789966, Length=531, Percent_Identity=25.2354048964218, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787762, Length=512, Percent_Identity=27.5390625, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1789887, Length=410, Percent_Identity=27.3170731707317, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787052, Length=477, Percent_Identity=24.1090146750524, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787551, Length=455, Percent_Identity=22.6373626373626, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59314; Mature: 59314

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMVGCGDKSASSGSSAKVDPNVLADKQELVINNAAEPESLDPQKVSGVPEAAVIRQMLV
CEEEECCCCCCCCCCCCCCCCHHHCCCHHHEECCCCCCCCCCHHHHCCCCHHHHHHHHHH
GLTTTDRDGKTIPGMAESWESTDNKVWTFKIRDAKWSNGDPVTANDFVYSWRRLLDPNTA
CCCCCCCCCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCC
SPYASYLVDAKVAGAEAIMEGKAAVDSLGVKALDDKTLQVTLSEPVPYFPDTLIHTSVKP
CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCHHHHCCCCC
VNQKAVEQFGDKWTDPANIVVNGPYKISEWQVNDKIVLTRNESYYDNANTTLEKITMLAI
CCHHHHHHHCCCCCCCCCEEEECCEEEEEEEECCEEEEEECCCCCCCCCCCEEEEEEEEE
PSSTTDVARYQAGEIDVTNEELPSEQFKSLKEQLGDEVSVSPMLCTYYYEFNTVKPPFND
CCCCCHHHHEECCCEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCH
ARVRRALALALDRNTITDKVVGQGQTPAYQLTPVSTNGMENNTPEWQNWDQARRVEEAKK
HHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
LLNEAGYSESKPLKFELLYNTSDNHKKIAVAASSLWKQSLGFVDVSLINKEWKTYLDTRR
HHHHCCCCCCCCEEEEEEECCCCCCEEEEEEHHHHHHHHCCEEEEEHHHHHHHHHHHHCC
NGNYQVARAGWCGDYNEPSTFLNIVKSGNSNNQGKYSSAAFDSLMTQTLKAGVTPEQRAN
CCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
LYKQAEVQLDKDMPNINVYHYVSPRLIKPYVVGFPVNDPLNNWQGKDLKIAKH
HHHHHHEEECCCCCCCEEEEEECCCEECCEEEEECCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MMMVGCGDKSASSGSSAKVDPNVLADKQELVINNAAEPESLDPQKVSGVPEAAVIRQMLV
CEEEECCCCCCCCCCCCCCCCHHHCCCHHHEECCCCCCCCCCHHHHCCCCHHHHHHHHHH
GLTTTDRDGKTIPGMAESWESTDNKVWTFKIRDAKWSNGDPVTANDFVYSWRRLLDPNTA
CCCCCCCCCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCC
SPYASYLVDAKVAGAEAIMEGKAAVDSLGVKALDDKTLQVTLSEPVPYFPDTLIHTSVKP
CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCHHHHCCCCC
VNQKAVEQFGDKWTDPANIVVNGPYKISEWQVNDKIVLTRNESYYDNANTTLEKITMLAI
CCHHHHHHHCCCCCCCCCEEEECCEEEEEEEECCEEEEEECCCCCCCCCCCEEEEEEEEE
PSSTTDVARYQAGEIDVTNEELPSEQFKSLKEQLGDEVSVSPMLCTYYYEFNTVKPPFND
CCCCCHHHHEECCCEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCH
ARVRRALALALDRNTITDKVVGQGQTPAYQLTPVSTNGMENNTPEWQNWDQARRVEEAKK
HHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
LLNEAGYSESKPLKFELLYNTSDNHKKIAVAASSLWKQSLGFVDVSLINKEWKTYLDTRR
HHHHCCCCCCCCEEEEEEECCCCCCEEEEEEHHHHHHHHCCEEEEEHHHHHHHHHHHHCC
NGNYQVARAGWCGDYNEPSTFLNIVKSGNSNNQGKYSSAAFDSLMTQTLKAGVTPEQRAN
CCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
LYKQAEVQLDKDMPNINVYHYVSPRLIKPYVVGFPVNDPLNNWQGKDLKIAKH
HHHHHHEEECCCCCCCEEEEEECCCEECCEEEEECCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187863; 9097039; 9278503; 2015910; 9298646; 9600841 [H]