Click here to switch to the map view.

The map label for this gene is traB [H]

Identifier: 148550804

GI number: 148550804

Start: 274228

End: 275559

Strand: Direct

Name: traB [H]

Synonym: Swit_5368

Alternate gene names: 148550804

Gene position: 274228-275559 (Clockwise)

Preceding gene: 148550803

Following gene: 148550805

Centisome position: 88.4

GC content: 65.32

Gene sequence:

>1332_bases
ATGGCACTCGCGGACATTTTCTCGCGCACCCGTCGCACCCTGGACGGTCCCGACGAAGAAACCGAGAATGTTTCACCGGT
AACCGGCGAAATCGGCAGCAACGAGGCGACGCGCAAGAAGCAGCGGTTGCTGCTCGCGGGCGTTGCCGGCGCGGGGCTGG
TGCTCTCCTCCTTCTGGATATTCGGGGGCAACGACAAGGACGCGGCTGAAGACGACGACGGTGAAAAGGTCGAGGTGTCG
ACCAAGGATCTGGTGAACCGCAACCTCTCCCAACAGGAGTGGATGGGGATGTCCGAGAACCAGTTCCAGTCGATGGAAAA
CCAGCTGAAGTCGGTGAATGCGCAGCAGAACCGCGTCGACGCGCTGGCAGCCCAGGTCGAAGCGCTGAAAGGACAGAACC
AGGCCCTTCAGGCTGATGGCCAGCGGGTCTTCTCCGCCTACCAGGCCGAGAACGAACGGCTCAAGCGTGAGGCGGCGCAG
CAGCGGGCGGCACCGCCGCCCCAGCCAGGTCCAGCCGCGCTCTACGGCCCGGGCGGGACCCAGGCCTATCGGCGGCCCGA
TGGCACGCCGGGGGCAGCCGGGCCCGCCGGCGCGCCGATGGGCGGAGCGGAAGTCAAGATGGTGAACTTCCAGACCGCCG
AGACCGGCAATGCCTCGCGCGTCGCCAAGGGCAACACGGTCTACACCGACAGCGTCAACTACCTGCCGCCCAACAGCTTC
GCGTCCGCCAAGGTGATCGTCGGCGTCGATGCCAGTGCCGGCGTCAACAGCCAGTCCGATCCGCTTCCGGTCGTGCTGCG
CGTGACGGGCCCTGCGCGCAGCGTCTTCCAGAACGGGCGCCTGCTCACCACCAAGATCGAGGGCTGCCTCATCAACGGGG
CGGCGCGCGGCGACCTTTCGGCCGAGAAGGTCTACGTCAAACTGCAGAAGATGACCTGTCCGCAGCCCGGCGGCCGCTAT
GCGGTCTCGGAGGTCAAGGGCTTCATCGCCTTCGGCGGCAAGACCGGGGTGCGCGGCCGGGTGGTCTCGCGCGAAGGCGG
GCTGGTGACGCAGGCCTTCATTGCCGGCCTCTTCGGTGGCTTTGGCCGCGGTTTCTCCGCAAATGCCAATTCGGTGTTCC
AGGGCACCAACATAACCACAAACGGCAAGCGCGAAAAACTCTCGGCGGGCGAGATCCTGGAGGGTGGCTTCGGGGAAGGC
GTCGCCCAGACCGGCGACATGGTCTCGAAATATCTGATCGAGCGCGCCGAACAGTATCAGCCGGTGATCGAGATGCCGAC
CGGCATCGATGTCGAAATCGTCTTCTTGGAGGGTGTCTATGTCCGTAACTGA

Upstream 100 bases:

>100_bases
GCGCCGCGCAGCGCGCTCGCCGTCTCCATCACCGAGCCGACGCTCGCGCCCGGCAAGGTCACCACGGCCTATCTCGTCTC
GCAGATCGGGAGATAGTCAT

Downstream 100 bases:

>100_bases
TCGCCTTCGCGCCGCTGCTGGGCGCACGCCCTGGAGCTTTGGCCTCATTGCCCTGCCGGTGGTGGGACTGGGCGCTGCAG
CCATCGCTGCCGCCGCCGTG

Product: TraB pilus assembly family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MALADIFSRTRRTLDGPDEETENVSPVTGEIGSNEATRKKQRLLLAGVAGAGLVLSSFWIFGGNDKDAAEDDDGEKVEVS
TKDLVNRNLSQQEWMGMSENQFQSMENQLKSVNAQQNRVDALAAQVEALKGQNQALQADGQRVFSAYQAENERLKREAAQ
QRAAPPPQPGPAALYGPGGTQAYRRPDGTPGAAGPAGAPMGGAEVKMVNFQTAETGNASRVAKGNTVYTDSVNYLPPNSF
ASAKVIVGVDASAGVNSQSDPLPVVLRVTGPARSVFQNGRLLTTKIEGCLINGAARGDLSAEKVYVKLQKMTCPQPGGRY
AVSEVKGFIAFGGKTGVRGRVVSREGGLVTQAFIAGLFGGFGRGFSANANSVFQGTNITTNGKREKLSAGEILEGGFGEG
VAQTGDMVSKYLIERAEQYQPVIEMPTGIDVEIVFLEGVYVRN

Sequences:

>Translated_443_residues
MALADIFSRTRRTLDGPDEETENVSPVTGEIGSNEATRKKQRLLLAGVAGAGLVLSSFWIFGGNDKDAAEDDDGEKVEVS
TKDLVNRNLSQQEWMGMSENQFQSMENQLKSVNAQQNRVDALAAQVEALKGQNQALQADGQRVFSAYQAENERLKREAAQ
QRAAPPPQPGPAALYGPGGTQAYRRPDGTPGAAGPAGAPMGGAEVKMVNFQTAETGNASRVAKGNTVYTDSVNYLPPNSF
ASAKVIVGVDASAGVNSQSDPLPVVLRVTGPARSVFQNGRLLTTKIEGCLINGAARGDLSAEKVYVKLQKMTCPQPGGRY
AVSEVKGFIAFGGKTGVRGRVVSREGGLVTQAFIAGLFGGFGRGFSANANSVFQGTNITTNGKREKLSAGEILEGGFGEG
VAQTGDMVSKYLIERAEQYQPVIEMPTGIDVEIVFLEGVYVRN
>Mature_442_residues
ALADIFSRTRRTLDGPDEETENVSPVTGEIGSNEATRKKQRLLLAGVAGAGLVLSSFWIFGGNDKDAAEDDDGEKVEVST
KDLVNRNLSQQEWMGMSENQFQSMENQLKSVNAQQNRVDALAAQVEALKGQNQALQADGQRVFSAYQAENERLKREAAQQ
RAAPPPQPGPAALYGPGGTQAYRRPDGTPGAAGPAGAPMGGAEVKMVNFQTAETGNASRVAKGNTVYTDSVNYLPPNSFA
SAKVIVGVDASAGVNSQSDPLPVVLRVTGPARSVFQNGRLLTTKIEGCLINGAARGDLSAEKVYVKLQKMTCPQPGGRYA
VSEVKGFIAFGGKTGVRGRVVSREGGLVTQAFIAGLFGGFGRGFSANANSVFQGTNITTNGKREKLSAGEILEGGFGEGV
AQTGDMVSKYLIERAEQYQPVIEMPTGIDVEIVFLEGVYVRN

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 46888; Mature: 46757

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALADIFSRTRRTLDGPDEETENVSPVTGEIGSNEATRKKQRLLLAGVAGAGLVLSSFWI
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEEECCHHHHHHHHHEE
FGGNDKDAAEDDDGEKVEVSTKDLVNRNLSQQEWMGMSENQFQSMENQLKSVNAQQNRVD
ECCCCCCCCCCCCCCEEEECHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
ALAAQVEALKGQNQALQADGQRVFSAYQAENERLKREAAQQRAAPPPQPGPAALYGPGGT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
QAYRRPDGTPGAAGPAGAPMGGAEVKMVNFQTAETGNASRVAKGNTVYTDSVNYLPPNSF
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEEECCCCCCCCCCC
ASAKVIVGVDASAGVNSQSDPLPVVLRVTGPARSVFQNGRLLTTKIEGCLINGAARGDLS
CCCEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHCCCEEEEEECEEEEECCCCCCCC
AEKVYVKLQKMTCPQPGGRYAVSEVKGFIAFGGKTGVRGRVVSREGGLVTQAFIAGLFGG
HHHEEEEEEECCCCCCCCCEEHHHHCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHH
FGRGFSANANSVFQGTNITTNGKREKLSAGEILEGGFGEGVAQTGDMVSKYLIERAEQYQ
CCCCCCCCCCCEEECCCCCCCCCHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
PVIEMPTGIDVEIVFLEGVYVRN
CEEECCCCCCEEEEEECCEEECC
>Mature Secondary Structure 
ALADIFSRTRRTLDGPDEETENVSPVTGEIGSNEATRKKQRLLLAGVAGAGLVLSSFWI
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEEECCHHHHHHHHHEE
FGGNDKDAAEDDDGEKVEVSTKDLVNRNLSQQEWMGMSENQFQSMENQLKSVNAQQNRVD
ECCCCCCCCCCCCCCEEEECHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
ALAAQVEALKGQNQALQADGQRVFSAYQAENERLKREAAQQRAAPPPQPGPAALYGPGGT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
QAYRRPDGTPGAAGPAGAPMGGAEVKMVNFQTAETGNASRVAKGNTVYTDSVNYLPPNSF
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEEECCCCCCCCCCC
ASAKVIVGVDASAGVNSQSDPLPVVLRVTGPARSVFQNGRLLTTKIEGCLINGAARGDLS
CCCEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHCCCEEEEEECEEEEECCCCCCCC
AEKVYVKLQKMTCPQPGGRYAVSEVKGFIAFGGKTGVRGRVVSREGGLVTQAFIAGLFGG
HHHEEEEEEECCCCCCCCCEEHHHHCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHH
FGRGFSANANSVFQGTNITTNGKREKLSAGEILEGGFGEGVAQTGDMVSKYLIERAEQYQ
CCCCCCCCCCCEEECCCCCCCCCHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
PVIEMPTGIDVEIVFLEGVYVRN
CEEECCCCCCEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]