| Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
|---|---|
| Accession | NC_009507 |
| Length | 310,228 |
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The map label for this gene is yxnA [H]
Identifier: 148550748
GI number: 148550748
Start: 209075
End: 210070
Strand: Direct
Name: yxnA [H]
Synonym: Swit_5312
Alternate gene names: 148550748
Gene position: 209075-210070 (Clockwise)
Preceding gene: 148550745
Following gene: 148550749
Centisome position: 67.39
GC content: 67.77
Gene sequence:
>996_bases ATGCCGCACCGACCGCTTTCCGATCAGGTCTTCGTCATCACTGGCGCGAGCTCGGGCATCGGCCTGCTTACCGCGCGCAA GGCGGCAGGGGCCGGCGCGCGCGTGTTCCTCATCAGCCGGAATGACGCGGCCCTGCGCGCGATCGTGCAGGAGATCGAGG CGGACGGTGGCCGGGCGGCTTACGCTGTCGCCGATGTCGGGGATCGCGAGGCGCTGCAGCGCGCCGCTTCCTGCGCCATA GCGGCCTTCGGCCGCGTCGACACATGGGTCAGCAACGCGGGGGTCGCCATCTATGCGCCGCTGCTTGCCACGCCATTGGA GGAACATGAGCGATTGTTCCGCACCAACTATTTCGGGGCGGTCAACAGCGCGCAGGTCGCCGTGCCCTATCTCACGGCAA GTGGCGGCGCGCTCGTTACGATCGGCTCGATTGCCGGCGACATGCCTTCGCCTGTCATGGGCGCTTATACTGCCTCCAAG CATGCGATCCACGCCTTCGTCGCCTCGCTGCGGATCGAACTCAAGGCCGCGCGATCGCCGGTGCGGGTGACGCTGATCAA GCCGTCGGGCATGACCACGCCGATCGCGATGCATGCCGCCAATCACCAGGACGGCCAAGCGCGGATCCCGCCGCCGCCTT ATGATCCGGCGCTCGTGGCCGATGCCATACTCTATACCGCGACCCACAATGTTCGTGCCCTCACGGTCGGCGGCATCGGA CGGCTGGAGGTGTTGTTCGCCAGCCATTTTCCGGCGCTGTTTGAGCGTCTCGCGCCGCTCGTCGGGCCTTTTCTCGTCGA TCGCTCGAAGCCCGCGACGCAAGGTGACAATCTTTTCGGGCCGGGCGCCGATGGCGAGGCACGCTCGCGCAACGAGGTGG GGCGCCGGTCGAGCCTAACCCTGGCGGCACGGACACGGCCACACGCGGCTGCGGCGCTCGTCGGCGGGGCTGCTGTGATC CTGGGCGGCCTGTTCCTGCGGAATCGGCGATCCTAG
Upstream 100 bases:
>100_bases TAGCGTCTGTCCCGGAACCCGTCGCCGGGCAGGCGAGTTCCCGTAGCGCATCCATTATGCCGGTCGCACGGCAACCGCCG CAAACCGACCGGACCGCCCC
Downstream 100 bases:
>100_bases GGGAACCAGGGGGCGACCGGGGGGATTATCGAACAGAGCCGCGCTCCCGCGCGGGACAGGGAGCTGCCATGGCCACCATT TCCAAACCCGCGGCCCCTGG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MPHRPLSDQVFVITGASSGIGLLTARKAAGAGARVFLISRNDAALRAIVQEIEADGGRAAYAVADVGDREALQRAASCAI AAFGRVDTWVSNAGVAIYAPLLATPLEEHERLFRTNYFGAVNSAQVAVPYLTASGGALVTIGSIAGDMPSPVMGAYTASK HAIHAFVASLRIELKAARSPVRVTLIKPSGMTTPIAMHAANHQDGQARIPPPPYDPALVADAILYTATHNVRALTVGGIG RLEVLFASHFPALFERLAPLVGPFLVDRSKPATQGDNLFGPGADGEARSRNEVGRRSSLTLAARTRPHAAAALVGGAAVI LGGLFLRNRRS
Sequences:
>Translated_331_residues MPHRPLSDQVFVITGASSGIGLLTARKAAGAGARVFLISRNDAALRAIVQEIEADGGRAAYAVADVGDREALQRAASCAI AAFGRVDTWVSNAGVAIYAPLLATPLEEHERLFRTNYFGAVNSAQVAVPYLTASGGALVTIGSIAGDMPSPVMGAYTASK HAIHAFVASLRIELKAARSPVRVTLIKPSGMTTPIAMHAANHQDGQARIPPPPYDPALVADAILYTATHNVRALTVGGIG RLEVLFASHFPALFERLAPLVGPFLVDRSKPATQGDNLFGPGADGEARSRNEVGRRSSLTLAARTRPHAAAALVGGAAVI LGGLFLRNRRS >Mature_330_residues PHRPLSDQVFVITGASSGIGLLTARKAAGAGARVFLISRNDAALRAIVQEIEADGGRAAYAVADVGDREALQRAASCAIA AFGRVDTWVSNAGVAIYAPLLATPLEEHERLFRTNYFGAVNSAQVAVPYLTASGGALVTIGSIAGDMPSPVMGAYTASKH AIHAFVASLRIELKAARSPVRVTLIKPSGMTTPIAMHAANHQDGQARIPPPPYDPALVADAILYTATHNVRALTVGGIGR LEVLFASHFPALFERLAPLVGPFLVDRSKPATQGDNLFGPGADGEARSRNEVGRRSSLTLAARTRPHAAAALVGGAAVIL GGLFLRNRRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=35.3233830845771, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI7706318, Length=178, Percent_Identity=30.3370786516854, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI32455239, Length=201, Percent_Identity=28.3582089552239, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI5031765, Length=201, Percent_Identity=28.3582089552239, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI40548397, Length=197, Percent_Identity=30.4568527918782, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI214010158, Length=197, Percent_Identity=30.4568527918782, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI214010156, Length=197, Percent_Identity=30.4568527918782, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI22758144, Length=197, Percent_Identity=30.4568527918782, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI32483357, Length=194, Percent_Identity=28.8659793814433, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI5031737, Length=195, Percent_Identity=29.7435897435897, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=30.4123711340206, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI7705925, Length=223, Percent_Identity=29.1479820627803, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI157739938, Length=176, Percent_Identity=28.4090909090909, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI210032110, Length=260, Percent_Identity=25, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI59889578, Length=176, Percent_Identity=30.1136363636364, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI31542939, Length=194, Percent_Identity=27.8350515463918, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=29.9465240641711, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI126723191, Length=172, Percent_Identity=29.6511627906977, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI119392083, Length=205, Percent_Identity=29.2682926829268, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40254986, Length=174, Percent_Identity=30.4597701149425, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI38348362, Length=182, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI109715829, Length=228, Percent_Identity=25.8771929824561, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1788459, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI87082100, Length=216, Percent_Identity=31.0185185185185, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786701, Length=184, Percent_Identity=32.0652173913043, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=28.7292817679558, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1787905, Length=189, Percent_Identity=31.2169312169312, Blast_Score=68, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71997402, Length=179, Percent_Identity=33.5195530726257, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI193203117, Length=223, Percent_Identity=30.4932735426009, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193203115, Length=220, Percent_Identity=30.4545454545455, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI71994604, Length=198, Percent_Identity=29.2929292929293, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17508895, Length=197, Percent_Identity=30.4568527918782, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71994600, Length=199, Percent_Identity=29.1457286432161, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=27.0491803278689, Blast_Score=78, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17570069, Length=174, Percent_Identity=30.4597701149425, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17567345, Length=199, Percent_Identity=26.6331658291457, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17562910, Length=196, Percent_Identity=29.5918367346939, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=30.1020408163265, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=27.7566539923954, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562904, Length=204, Percent_Identity=28.4313725490196, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562906, Length=252, Percent_Identity=26.5873015873016, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI115534660, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17559104, Length=191, Percent_Identity=30.8900523560209, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538486, Length=196, Percent_Identity=29.5918367346939, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=29.0816326530612, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=27.1356783919598, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560150, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=7e-11, Organism=Caenorhabditis elegans, GI72000259, Length=197, Percent_Identity=27.4111675126904, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=230, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=176, Percent_Identity=26.7045454545455, Blast_Score=70, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=29.0816326530612, Blast_Score=66, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6322067, Length=270, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=9e-12, Organism=Drosophila melanogaster, GI28571526, Length=191, Percent_Identity=32.9842931937173, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357041, Length=209, Percent_Identity=30.622009569378, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=34.5549738219895, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24644339, Length=199, Percent_Identity=31.6582914572864, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=29.5918367346939, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI221510726, Length=269, Percent_Identity=27.1375464684015, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24580925, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24648944, Length=225, Percent_Identity=28, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=31.1827956989247, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI21356301, Length=235, Percent_Identity=26.8085106382979, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI28571387, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581726, Length=197, Percent_Identity=28.4263959390863, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281364494, Length=256, Percent_Identity=26.953125, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357673, Length=180, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=28.1407035175879, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 34503; Mature: 34372
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHRPLSDQVFVITGASSGIGLLTARKAAGAGARVFLISRNDAALRAIVQEIEADGGRAA CCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEE YAVADVGDREALQRAASCAIAAFGRVDTWVSNAGVAIYAPLLATPLEEHERLFRTNYFGA EEEECCCCHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEHHHHHCCHHHHHHHHHHHCCCC VNSAQVAVPYLTASGGALVTIGSIAGDMPSPVMGAYTASKHAIHAFVASLRIELKAARSP CCCCEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCC VRVTLIKPSGMTTPIAMHAANHQDGQARIPPPPYDPALVADAILYTATHNVRALTVGGIG EEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHEECCCEEEEEECCCC RLEVLFASHFPALFERLAPLVGPFLVDRSKPATQGDNLFGPGADGEARSRNEVGRRSSLT EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEE LAARTRPHAAAALVGGAAVILGGLFLRNRRS EEECCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PHRPLSDQVFVITGASSGIGLLTARKAAGAGARVFLISRNDAALRAIVQEIEADGGRAA CCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEE YAVADVGDREALQRAASCAIAAFGRVDTWVSNAGVAIYAPLLATPLEEHERLFRTNYFGA EEEECCCCHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEHHHHHCCHHHHHHHHHHHCCCC VNSAQVAVPYLTASGGALVTIGSIAGDMPSPVMGAYTASKHAIHAFVASLRIELKAARSP CCCCEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCC VRVTLIKPSGMTTPIAMHAANHQDGQARIPPPPYDPALVADAILYTATHNVRALTVGGIG EEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHEECCCEEEEEECCCC RLEVLFASHFPALFERLAPLVGPFLVDRSKPATQGDNLFGPGADGEARSRNEVGRRSSLT EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEE LAARTRPHAAAALVGGAAVILGGLFLRNRRS EEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]