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The map label for this gene is yagT [H]

Identifier: 148550749

GI number: 148550749

Start: 210139

End: 210645

Strand: Direct

Name: yagT [H]

Synonym: Swit_5313

Alternate gene names: 148550749

Gene position: 210139-210645 (Clockwise)

Preceding gene: 148550748

Following gene: 148550750

Centisome position: 67.74

GC content: 63.31

Gene sequence:

>507_bases
ATGGCCACCATTTCCAAACCCGCGGCCCCTGGCGACGTCGAACCTCTCGATATCAGCCTCACCATCAACGGCGAACGGCA
GGCGTTCGCGGTCCTGCCCTGGGTAACGCTGCTCGATCTGCTGCGCGACCATGCCGATTTCACTGGCACGAAGAAGGGCT
GCGATCATGGCCAGTGCGGCGCCTGCACGGTGCTGGTCGGCGACCGCCGGATCAACAGCTGCCTGCGTCTTGCGGTGATG
CATGATGGCGATAACGTCACGACGATCGAGGGGATGGGCGATGGGGACGCGCTGCATCCGCTGCAACAGGCGTTTTTGGA
CCATGACGCCTTCCAGTGCGGCTATTGCACGCCGGGCCAGATCTGCTCGGCCCAGGGGCTGATCAACGAAGGCCGCGCCC
GAAGCCGGGAGGAGATACGCGAGCTCATGAGCGGCAATCTTTGTCGTTGCGGCGCGTATACGAACATCGCCGACGCTATC
GAGCAGGTCTTGGGAGAGCGAGCATGA

Upstream 100 bases:

>100_bases
GCGGCCTGTTCCTGCGGAATCGGCGATCCTAGGGGAACCAGGGGGCGACCGGGGGGATTATCGAACAGAGCCGCGCTCCC
GCGCGGGACAGGGAGCTGCC

Downstream 100 bases:

>100_bases
ACCGCTTTGGCTATGCGCGGCCAACGTCGATCGCGGACGCCGTCAGCTTGGCCGCAAAGGACGGTGCGCGCTACATCGCG
GGTGGCACGAACCTGGTCGA

Product: 2Fe-2S iron-sulfur cluster binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MATISKPAAPGDVEPLDISLTINGERQAFAVLPWVTLLDLLRDHADFTGTKKGCDHGQCGACTVLVGDRRINSCLRLAVM
HDGDNVTTIEGMGDGDALHPLQQAFLDHDAFQCGYCTPGQICSAQGLINEGRARSREEIRELMSGNLCRCGAYTNIADAI
EQVLGERA

Sequences:

>Translated_168_residues
MATISKPAAPGDVEPLDISLTINGERQAFAVLPWVTLLDLLRDHADFTGTKKGCDHGQCGACTVLVGDRRINSCLRLAVM
HDGDNVTTIEGMGDGDALHPLQQAFLDHDAFQCGYCTPGQICSAQGLINEGRARSREEIRELMSGNLCRCGAYTNIADAI
EQVLGERA
>Mature_167_residues
ATISKPAAPGDVEPLDISLTINGERQAFAVLPWVTLLDLLRDHADFTGTKKGCDHGQCGACTVLVGDRRINSCLRLAVMH
DGDNVTTIEGMGDGDALHPLQQAFLDHDAFQCGYCTPGQICSAQGLINEGRARSREEIRELMSGNLCRCGAYTNIADAIE
QVLGERA

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=135, Percent_Identity=39.2592592592593, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1786480, Length=177, Percent_Identity=52.5423728813559, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI1789232, Length=149, Percent_Identity=39.5973154362416, Blast_Score=107, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17539860, Length=157, Percent_Identity=34.3949044585987, Blast_Score=95, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32566215, Length=140, Percent_Identity=35.7142857142857, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17540638, Length=155, Percent_Identity=35.4838709677419, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24647201, Length=155, Percent_Identity=34.8387096774194, Blast_Score=98, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17737937, Length=148, Percent_Identity=39.8648648648649, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24647195, Length=161, Percent_Identity=35.4037267080745, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24647197, Length=161, Percent_Identity=35.4037267080745, Blast_Score=90, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24647199, Length=156, Percent_Identity=33.974358974359, Blast_Score=86, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24647193, Length=157, Percent_Identity=35.6687898089172, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 18044; Mature: 17912

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
5.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATISKPAAPGDVEPLDISLTINGERQAFAVLPWVTLLDLLRDHADFTGTKKGCDHGQCG
CCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
ACTVLVGDRRINSCLRLAVMHDGDNVTTIEGMGDGDALHPLQQAFLDHDAFQCGYCTPGQ
EEEEEECCHHHHHHHEEHEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
ICSAQGLINEGRARSREEIRELMSGNLCRCGAYTNIADAIEQVLGERA
HHHHHCCHHCCCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
ATISKPAAPGDVEPLDISLTINGERQAFAVLPWVTLLDLLRDHADFTGTKKGCDHGQCG
CCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
ACTVLVGDRRINSCLRLAVMHDGDNVTTIEGMGDGDALHPLQQAFLDHDAFQCGYCTPGQ
EEEEEECCHHHHHHHEEHEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
ICSAQGLINEGRARSREEIRELMSGNLCRCGAYTNIADAIEQVLGERA
HHHHHCCHHCCCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]