Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550681
Identifier: 148550681
GI number: 148550681
Start: 133208
End: 133666
Strand: Reverse
Name: 148550681
Synonym: Swit_5244
Alternate gene names: NA
Gene position: 133666-133208 (Counterclockwise)
Preceding gene: 148550682
Following gene: 148550680
Centisome position: 43.09
GC content: 68.41
Gene sequence:
>459_bases ATGAACATCGGTTCCATCGCCAAGAACGCCGCCGGCCACCTCGTCGGCCGTGTGTCCACCCTGACCGTCGAGCTCACCAT CGCGCTGCGCCCGGTCCACTCGGCCAATCCCAATGCGCCCAAGTTCGAAGTGATGGCGCTGTCGGCGGCGCGCGCCTGGG TCCGTGTCGGCGCATTGTTCGAGCTCGCCTCGCGCGAGAGCGGCCTTATCTTCTACAACGGCAAGATCGAGGACCCGAGC TTCGCCCAGCCGCTCTATGTCTCGCTGTTCCAGCAGCAGGACGGCTCCTACAATGTGGTCTGGTCGCGCCCCTCGCGCCG CCGCGAACTCCCCGCCGAAATGGCGATGCCCGCCGATGACGGCCTGCCGCCGCTGCCGGGCGAAGAGGCCTCCCAGGCCG GACAGAGCGAACCCGATGGGCTGGGCACCAGCTCGGCTCCGCCTGCCTTCGCCGACTGA
Upstream 100 bases:
>100_bases CCTGGCGGCGCCTGCTCGGCCCAGCGGCCGAGGAGAGGAGGGGGTGAGGGACTGGCGTCCCGGACAAGGGGTTCGAGGAC GCTTTCCAAGGAGAAGTCCC
Downstream 100 bases:
>100_bases TCGCCACCGCTTTTTCCACCGACAGGGCTCGCCTCGCACGCCTGCGAAGCGGGCCCTGTCGTCATGCCGCCGCTCGCGCG GCGCTGTGAAGGGGAGGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MNIGSIAKNAAGHLVGRVSTLTVELTIALRPVHSANPNAPKFEVMALSAARAWVRVGALFELASRESGLIFYNGKIEDPS FAQPLYVSLFQQQDGSYNVVWSRPSRRRELPAEMAMPADDGLPPLPGEEASQAGQSEPDGLGTSSAPPAFAD
Sequences:
>Translated_152_residues MNIGSIAKNAAGHLVGRVSTLTVELTIALRPVHSANPNAPKFEVMALSAARAWVRVGALFELASRESGLIFYNGKIEDPS FAQPLYVSLFQQQDGSYNVVWSRPSRRRELPAEMAMPADDGLPPLPGEEASQAGQSEPDGLGTSSAPPAFAD >Mature_152_residues MNIGSIAKNAAGHLVGRVSTLTVELTIALRPVHSANPNAPKFEVMALSAARAWVRVGALFELASRESGLIFYNGKIEDPS FAQPLYVSLFQQQDGSYNVVWSRPSRRRELPAEMAMPADDGLPPLPGEEASQAGQSEPDGLGTSSAPPAFAD
Specific function: Unknown
COG id: COG5489
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16176; Mature: 16176
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIGSIAKNAAGHLVGRVSTLTVELTIALRPVHSANPNAPKFEVMALSAARAWVRVGALF CCCCHHHHHHHHHHEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHH ELASRESGLIFYNGKIEDPSFAQPLYVSLFQQQDGSYNVVWSRPSRRRELPAEMAMPADD HHHCCCCCEEEECCEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCCC GLPPLPGEEASQAGQSEPDGLGTSSAPPAFAD CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNIGSIAKNAAGHLVGRVSTLTVELTIALRPVHSANPNAPKFEVMALSAARAWVRVGALF CCCCHHHHHHHHHHEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHH ELASRESGLIFYNGKIEDPSFAQPLYVSLFQQQDGSYNVVWSRPSRRRELPAEMAMPADD HHHCCCCCEEEECCEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCCC GLPPLPGEEASQAGQSEPDGLGTSSAPPAFAD CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA