Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
---|---|
Accession | NC_009507 |
Length | 310,228 |
Click here to switch to the map view.
The map label for this gene is klcA [H]
Identifier: 148550680
GI number: 148550680
Start: 132608
End: 133042
Strand: Reverse
Name: klcA [H]
Synonym: Swit_5243
Alternate gene names: 148550680
Gene position: 133042-132608 (Counterclockwise)
Preceding gene: 148550681
Following gene: 148550679
Centisome position: 42.89
GC content: 64.6
Gene sequence:
>435_bases ATGACAGACACTCTTCCCGCCATCGCCGATGCCCCCTGCAACGCCGCAACCCCCGTGCCCGACGCGCGGCGCGGCACATT CCTCCCTGCGCTTTTTGGCCGCCGTCATTTCTTCAAGGGCGAGACGCTGGTCTATTCCTTCCTGCAGTGGCTCTCGGCCG ATTATGGCGGCGGCTACTGGCAGTTCATGGAACAGGCGGGGCACCCGCTCTATCTCGTCCCCGCCGGACGACCGGCCTAT CGCATCTGCTGCAACAGCAACCGCTATGAGGGCACCGTCTCCGCCGACGCTGCGGGCATCATCGCCACGCTCTTCGCCTT CTCGCACCTCTCCTTCGAGGTCGAAGACGATCATATCGCCGAGGCCTTCCACCGCCTGCGCGACTATGCCGGCGATCATC CCGAGGCCGCGAAAATCTTCGGCGCGATCGACTAG
Upstream 100 bases:
>100_bases GCCGCCGCTCGCGCGGCGCTGTGAAGGGGAGGGGGAGCGGTGATGATGGTCCTGCCGCGAAAAGGAGCGTCCGGGCCGGT CCCTTTGTCGGAGTTCCCGC
Downstream 100 bases:
>100_bases GTCCGTTCCATGCGCGGGTCTGCCGTCAGACGCCAGGCCCCCCTGACCCCTGGAGGATTTCATGTTCAGCATTTTTGATA TCGGCGCGGCGCCGGCCAAT
Product: antirestriction protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MTDTLPAIADAPCNAATPVPDARRGTFLPALFGRRHFFKGETLVYSFLQWLSADYGGGYWQFMEQAGHPLYLVPAGRPAY RICCNSNRYEGTVSADAAGIIATLFAFSHLSFEVEDDHIAEAFHRLRDYAGDHPEAAKIFGAID
Sequences:
>Translated_144_residues MTDTLPAIADAPCNAATPVPDARRGTFLPALFGRRHFFKGETLVYSFLQWLSADYGGGYWQFMEQAGHPLYLVPAGRPAY RICCNSNRYEGTVSADAAGIIATLFAFSHLSFEVEDDHIAEAFHRLRDYAGDHPEAAKIFGAID >Mature_143_residues TDTLPAIADAPCNAATPVPDARRGTFLPALFGRRHFFKGETLVYSFLQWLSADYGGGYWQFMEQAGHPLYLVPAGRPAYR ICCNSNRYEGTVSADAAGIIATLFAFSHLSFEVEDDHIAEAFHRLRDYAGDHPEAAKIFGAID
Specific function: Could be involved in overcoming restriction barriers during establishment after conjugative transfer [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the antirestriction protein family [H]
Homologues:
Organism=Escherichia coli, GI1786442, Length=135, Percent_Identity=34.0740740740741, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1788996, Length=145, Percent_Identity=30.3448275862069, Blast_Score=67, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004914 - ProDom: PD012854 [H]
Pfam domain/function: PF03230 Antirestrict [H]
EC number: NA
Molecular weight: Translated: 15875; Mature: 15744
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTLPAIADAPCNAATPVPDARRGTFLPALFGRRHFFKGETLVYSFLQWLSADYGGGYW CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHCCCCHHHHHHHHHHHCCCCCCHHH QFMEQAGHPLYLVPAGRPAYRICCNSNRYEGTVSADAAGIIATLFAFSHLSFEVEDDHIA HHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEECHHHHH EAFHRLRDYAGDHPEAAKIFGAID HHHHHHHHHCCCCCCHHHHHCCCC >Mature Secondary Structure TDTLPAIADAPCNAATPVPDARRGTFLPALFGRRHFFKGETLVYSFLQWLSADYGGGYW CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHCCCCHHHHHHHHHHHCCCCCCHHH QFMEQAGHPLYLVPAGRPAYRICCNSNRYEGTVSADAAGIIATLFAFSHLSFEVEDDHIA HHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEECHHHHH EAFHRLRDYAGDHPEAAKIFGAID HHHHHHHHHCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7773415 [H]