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The map label for this gene is 148359481

Identifier: 148359481

GI number: 148359481

Start: 2248166

End: 2249212

Strand: Reverse

Name: 148359481

Synonym: LPC_1389

Alternate gene names: NA

Gene position: 2249212-2248166 (Counterclockwise)

Preceding gene: 148359484

Following gene: 148359480

Centisome position: 62.89

GC content: 35.91

Gene sequence:

>1047_bases
ATGATTCAATTAGAGGAGTCAAAAATGATTCATATTTTGTACAAGCAGGGATACAGTAAAAAAGCGATTGCTAGAAAATT
GGGTATGTCGATAAATACTGTTCGAAAATATCTTAAAAGTGGTTCAGAGCCTTATTACAAAAGGCGTGATAAAAAGCCAT
TAAAGCTTGACCCCTATAAAGCATATATTCAAAAAAGATTAAAAGATGCAACACCTCATTGGGTACCAGCTACTGTGATT
TATCGAGAGATTAAATTGTTTGGTTATGATGGATGCAGCTCTCAATTAAGAGCATATATGCATACTTTAAGGTCAAAAAA
AGAAGAGGTTATTGTTCGGTTTGAAACAGAGCCTGGACAGCAGATGCAGGTGGATTGGGCTCAATTCCGAAGAGGAAAGG
ATAGATTAAGTGCTTTTATTGCAACCATGGGATATTCCAGAGCATCTTATGTAGAGTTTGTCAGCGATGAAACCTTGGAA
ACGCTTATTGCATGCCATAAAAATGCATTCGAATATTTTGGTGGAGTTCCTTATACGATCCTATATGACAATATGAAAAC
AGTCATTATTGAACGAAATGGATATGGCCCAAGCCAACATCGATTTCAAGCTGGTTTTTGGGATTTTGCAAAACATACTG
GATTTCGTCCTAAAGTGTGTCAACCTTATAGGGCACAAACAAAAGGCAAAGTTGAACGCTTTATTCATTATTTAAAATAC
AGTTTTTATTTTCCTTTAGTTGGGCAATTGAAGGCACTTGGCTTAAGTTTAGATAAAGAGACAGCCAATATGCATGTTTT
AAAATGGCTAAATGAAATTGCTAATCAACGAGTACATGCTACAACAGGAGCAATTCCATTCGAACGACTTCTTGATGAAC
AAGCAAAACTACAACCATTGTCATCTACCTATTCTGGTAAATTATTTTCTCATTTGGAAAATAAGGAGGTTCACTATTTT
GCCTTTCAATTATTAGACAACACTGCAATGCAACATGAATTGTCAATTTATCAGAAACTACTCGAGCGCACAGAGGAGGC
TGCATGA

Upstream 100 bases:

>100_bases
TTTGCCTGTCGTTGCTGAATATAAACTGATCCCCTTTGCCGACTGAAAATTGATCCCCCTACTATAGTTTTCTTCAGGAG
AATGAATTCTGGAGGAGGGA

Downstream 100 bases:

>100_bases
ATATTCAACATGAGCGTATTTTATCACTATGTGAACGCTTGAATTTATCAGCGATAGCGACAAATTACTCTTATCTAGCT
CAAGAGGCAGCAATTCATAA

Product: putative IS5376 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MIQLEESKMIHILYKQGYSKKAIARKLGMSINTVRKYLKSGSEPYYKRRDKKPLKLDPYKAYIQKRLKDATPHWVPATVI
YREIKLFGYDGCSSQLRAYMHTLRSKKEEVIVRFETEPGQQMQVDWAQFRRGKDRLSAFIATMGYSRASYVEFVSDETLE
TLIACHKNAFEYFGGVPYTILYDNMKTVIIERNGYGPSQHRFQAGFWDFAKHTGFRPKVCQPYRAQTKGKVERFIHYLKY
SFYFPLVGQLKALGLSLDKETANMHVLKWLNEIANQRVHATTGAIPFERLLDEQAKLQPLSSTYSGKLFSHLENKEVHYF
AFQLLDNTAMQHELSIYQKLLERTEEAA

Sequences:

>Translated_348_residues
MIQLEESKMIHILYKQGYSKKAIARKLGMSINTVRKYLKSGSEPYYKRRDKKPLKLDPYKAYIQKRLKDATPHWVPATVI
YREIKLFGYDGCSSQLRAYMHTLRSKKEEVIVRFETEPGQQMQVDWAQFRRGKDRLSAFIATMGYSRASYVEFVSDETLE
TLIACHKNAFEYFGGVPYTILYDNMKTVIIERNGYGPSQHRFQAGFWDFAKHTGFRPKVCQPYRAQTKGKVERFIHYLKY
SFYFPLVGQLKALGLSLDKETANMHVLKWLNEIANQRVHATTGAIPFERLLDEQAKLQPLSSTYSGKLFSHLENKEVHYF
AFQLLDNTAMQHELSIYQKLLERTEEAA
>Mature_348_residues
MIQLEESKMIHILYKQGYSKKAIARKLGMSINTVRKYLKSGSEPYYKRRDKKPLKLDPYKAYIQKRLKDATPHWVPATVI
YREIKLFGYDGCSSQLRAYMHTLRSKKEEVIVRFETEPGQQMQVDWAQFRRGKDRLSAFIATMGYSRASYVEFVSDETLE
TLIACHKNAFEYFGGVPYTILYDNMKTVIIERNGYGPSQHRFQAGFWDFAKHTGFRPKVCQPYRAQTKGKVERFIHYLKY
SFYFPLVGQLKALGLSLDKETANMHVLKWLNEIANQRVHATTGAIPFERLLDEQAKLQPLSSTYSGKLFSHLENKEVHYF
AFQLLDNTAMQHELSIYQKLLERTEEAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 40666; Mature: 40666

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLEESKMIHILYKQGYSKKAIARKLGMSINTVRKYLKSGSEPYYKRRDKKPLKLDPYK
CCEECCCCEEEEHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCHHH
AYIQKRLKDATPHWVPATVIYREIKLFGYDGCSSQLRAYMHTLRSKKEEVIVRFETEPGQ
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
QMQVDWAQFRRGKDRLSAFIATMGYSRASYVEFVSDETLETLIACHKNAFEYFGGVPYTI
EEECCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LYDNMKTVIIERNGYGPSQHRFQAGFWDFAKHTGFRPKVCQPYRAQTKGKVERFIHYLKY
EECCCEEEEEEECCCCCCHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SFYFPLVGQLKALGLSLDKETANMHVLKWLNEIANQRVHATTGAIPFERLLDEQAKLQPL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEHHCCCCCHHHHHHHHHHCCCC
SSTYSGKLFSHLENKEVHYFAFQLLDNTAMQHELSIYQKLLERTEEAA
HHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIQLEESKMIHILYKQGYSKKAIARKLGMSINTVRKYLKSGSEPYYKRRDKKPLKLDPYK
CCEECCCCEEEEHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCHHH
AYIQKRLKDATPHWVPATVIYREIKLFGYDGCSSQLRAYMHTLRSKKEEVIVRFETEPGQ
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
QMQVDWAQFRRGKDRLSAFIATMGYSRASYVEFVSDETLETLIACHKNAFEYFGGVPYTI
EEECCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LYDNMKTVIIERNGYGPSQHRFQAGFWDFAKHTGFRPKVCQPYRAQTKGKVERFIHYLKY
EECCCEEEEEEECCCCCCHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SFYFPLVGQLKALGLSLDKETANMHVLKWLNEIANQRVHATTGAIPFERLLDEQAKLQPL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEHHCCCCCHHHHHHHHHHCCCC
SSTYSGKLFSHLENKEVHYFAFQLLDNTAMQHELSIYQKLLERTEEAA
HHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]