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The map label for this gene is ygdK [H]

Identifier: 147674303

GI number: 147674303

Start: 2014877

End: 2015311

Strand: Reverse

Name: ygdK [H]

Synonym: VC0395_A1897

Alternate gene names: 147674303

Gene position: 2015311-2014877 (Counterclockwise)

Preceding gene: 147675632

Following gene: 147675044

Centisome position: 66.64

GC content: 51.03

Gene sequence:

>435_bases
ATGATGAGTCCATTTCCCGCTCATCCCTTTGGTGATGACATTAATGCACAAACCGTCTTAGAAACCATGCAAACATTGCG
CGGTTGGGAAGATCGTTATCGCCAGATCATCCAATGGGGCAAACTGCTGCCTGTGATGCCAGAAGCGCTGAAAAGTGAGC
AAGTTCTTGTCTCGGGCTGTGAAAGTGAAGTGTGGCTAGTGGCAGAGCAGCAAGGTGAGCAGTGGTTTTTCTGCGCGGAT
TCCGATGCGCGGATTGTGCGCGGTTTGATTGCGATTGTGTTGGCGGCACTGAATGGCAAAACGTCTGCAGAAATTAGCGC
GTTTTCTATGGATGACTACTTTGCCGAGCTTGGCTTGCTGGCGCATTTAAGCCCATCACGCGGTAATGGGTTGCAAGCGA
TTGTGGCGACGATTCAGGCCAAAGCGCATCACTAA

Upstream 100 bases:

>100_bases
TTTGGCGCTGCGACGGTAGTGACGGCGACGTTTGGTTTTGTCGCGGTGGCGCGCATCGTCGATAAATTGATTCAAAAGCA
TAAAGTGAAGGCGTGAGGGC

Downstream 100 bases:

>100_bases
CGACATACTTTTTCCAAGCAAAAGAGCCTCATAACCATGAGGCTCTTTTGCTATCAGTTCTGCCGATGTTTACAGTAAAT
CGACCGCTTTATGGATGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MMSPFPAHPFGDDINAQTVLETMQTLRGWEDRYRQIIQWGKLLPVMPEALKSEQVLVSGCESEVWLVAEQQGEQWFFCAD
SDARIVRGLIAIVLAALNGKTSAEISAFSMDDYFAELGLLAHLSPSRGNGLQAIVATIQAKAHH

Sequences:

>Translated_144_residues
MMSPFPAHPFGDDINAQTVLETMQTLRGWEDRYRQIIQWGKLLPVMPEALKSEQVLVSGCESEVWLVAEQQGEQWFFCAD
SDARIVRGLIAIVLAALNGKTSAEISAFSMDDYFAELGLLAHLSPSRGNGLQAIVATIQAKAHH
>Mature_144_residues
MMSPFPAHPFGDDINAQTVLETMQTLRGWEDRYRQIIQWGKLLPVMPEALKSEQVLVSGCESEVWLVAEQQGEQWFFCAD
SDARIVRGLIAIVLAALNGKTSAEISAFSMDDYFAELGLLAHLSPSRGNGLQAIVATIQAKAHH

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=144, Percent_Identity=48.6111111111111, Blast_Score=125, Evalue=1e-30,
Organism=Escherichia coli, GI1787969, Length=121, Percent_Identity=34.7107438016529, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15899; Mature: 15899

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSPFPAHPFGDDINAQTVLETMQTLRGWEDRYRQIIQWGKLLPVMPEALKSEQVLVSGC
CCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHCCCHHEEECC
ESEVWLVAEQQGEQWFFCADSDARIVRGLIAIVLAALNGKTSAEISAFSMDDYFAELGLL
CCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH
AHLSPSRGNGLQAIVATIQAKAHH
HHCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MMSPFPAHPFGDDINAQTVLETMQTLRGWEDRYRQIIQWGKLLPVMPEALKSEQVLVSGC
CCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHCCCHHEEECC
ESEVWLVAEQQGEQWFFCADSDARIVRGLIAIVLAALNGKTSAEISAFSMDDYFAELGLL
CCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH
AHLSPSRGNGLQAIVATIQAKAHH
HHCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]