| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is ydjJ [C]
Identifier: 146343795
GI number: 146343795
Start: 7353401
End: 7355593
Strand: Reverse
Name: ydjJ [C]
Synonym: BRADO7044
Alternate gene names: 146343795
Gene position: 7355593-7353401 (Counterclockwise)
Preceding gene: 146343796
Following gene: 146343794
Centisome position: 98.65
GC content: 63.89
Gene sequence:
>2193_bases GTGAAGCAGATCGCGCAAAACTATAAGACTGGTGAGCTCAAGGTGATCGAAGTGCCCGCGCCGCGCTGCCGCCCGGGCGG CGTTCTGGTGCAAACGGCATTCTCGGCCGTCTCCACCGGCACCGAGCTGATGAAGTTTTCCGAAGGCCGCCTGTCGCTGA TCGGCAAGGCGCGCGCGCGACCGGATCAGGTCGCCAAGGTGGTCCGATCCGTGCAGCAGCAGGGCCTGCTCGCGACCTAC AACAAGGTCATGAACAAGCTCGATTCGTTCACCCCGCTCGGCTACTCGAGCTCAGGCATCGTGGTCGAGATCGGCGAAGG CGTCAGCGGCTTCCATGTCGGCCAGCGCGTCTGTTGTGCCGGCAATCAATACGCCACTCACGCCGAATACAACTGGGTGC CGACCAACCTCTGCGTTCCGCTTCCCGACGGTGCCCCGCTCGACCAGGCCGCCTTTACCACCATAGCCGCGATCGCTCTG CAGGCGATGCGCCAATCGGAAACGCGCCTGGGCGAGACCGTGTGCGTCATCGGTCTCGGCCTGATCGGCCAGATCCTCGT GCGATTGCTGCGCAGCGCCGGGGTGCGTACGGTGGGCCTGGATCGCCTCGAAACGCGCTGCCGCAGCGCCGAGGCCGCCG GAGCGGTCCTTTGCGCGGTCGCCTCGGATGACAGCTCGGAGCAATTCGCGAGCAGGGTCACGCAACTGACTGCAGGGAAT GGCGTCGATTGCGTGTTCATCACCGCGGGCAGCAACGATCCCGATCTTGCTAAGCGCGCGGCGGGCTTGTTGCGGGATCG CGGCCGGATCGTCGACATCGGCAAATGCACGCTGAACCTGCCGTGGAACGATTTCTACGACAAGGAACTGGATGTCCGCT TTTCCCGCTCGTACGGGCCCGGCCGCTACGATCCGCTCTATGAGGAAGGGGGCATTGATTATCCCATCGGCCAGGTGCGC TGGACCGAGCGACGCAACATGGAGGCGATTGTCGGTTTGCTCGCGGATGGACGTCTCGACTTTTCGTCCCTGGTAACCGA TGTCGTGGCGTTCGATGCCGCTGTTTCTGCGTTCGAGCGTCTGAACAAGGGAAGTGCTGATAGCCTTGGCGTGCTGTTTT CCTACGCGCCGGATGCCGCGCGCTCGGACCGCATTGCGTATCGGCCGCGAGCCGTCGCGAGCAAGGATCGGGTCCGGCTG GGCGTGATCGGGGCAGGCGCCTATGCTTCCAGCATGCTGCTGCCCCAACTCGTGAGCAATGATCAGGTCGAGCTGGTCGA GGTTGTCACCAACACCGGCCTCAGCGGCGCGACCGCCGCCCGCAAGTTCGGCTTTGCGCGCGCATCGACGAACGCATCGA CCGTGCTCGAGGCCGACGACATCGATGCCGTTCTGATCGCGACGCGTCATGCCTCGCATGCCGATCTCGCGGCTCGGGCG CTACGCGCCGGCAAGGCCGTGTTTGTCGAAAAGCCACTGGCGCTCGACCGGACGTCGCTTGCCCGGGTGATCGAAACCGT TCATCAGACCGGTAACGACCGTTTGATGGTCGGCTTCAATCGCCGCTTCTCGCCGCTGCTCTCCTCGGCGCGTGATTCGT TTTCTAGTTCGGGTCCGCAAATCCTGCACTACCGTGTGGTCGCCGGACCACTGGAGAAGACATCCTGGTATTCCCAGGCC GAAACCGAGGGAAGCCGCTTTGCCGGTGAAGGCGGTCACTTCATCGATGCGCTCAGCTGGTGGGTCGGATCCGAGCCCGT CCGGGTCACGGCTTCGGCGGCCGGCAGCGATATCGACAACCTGGTGGCGACCCTCACCTTCGACGATGGCTCGGTCGCGA CATTGAGCTACCTGACCGGAGGTGACTCACGGGTGCCAAAGGAGCTGCTCGAAGCCTCTGGGTCCGCGGGCTTTGTGAAG TTTGACAACTTCTCCCGCGTCGAGAGCTGGAGCAAAGGGAGCCGCTCTTCGAAGAAGGCTCCGTTGGATAAGGGGCAGGG GCCCATGCTGTCGGCCTTCGTCGACTGTGTCCGCTCAGGAAAGCCGATGCCGATTCCGTTTCAATCCTTGCTCGCGACCA CCCGCGCCACTCTGGCGGTCCAGGAGAGCGCCGCCACGGGGCTTCTCGTCGATCTCAGATCGGCGACCCCGCCGGAAATT GAGAACGAACTCTCGGCGTCGGCGATCCCATGA
Upstream 100 bases:
>100_bases TGCTCACCGAGGAGCAAAACTAACCATCGGGTTTGTCTCTGCTTTTATGAAGCGAGCGGCCGCGCTAGAACGCACCCGTT GATCGGACACAGAACAGACC
Downstream 100 bases:
>100_bases ATCCGGGCTGGTACCTCCGCCGGCTCATCCGCATGGAGCTGTCCGAGCTCAGCGGCCGCGTTCAGGATCAGCTCTGGCGC CTTTTTTGGCGCCTGCAAGC
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MKQIAQNYKTGELKVIEVPAPRCRPGGVLVQTAFSAVSTGTELMKFSEGRLSLIGKARARPDQVAKVVRSVQQQGLLATY NKVMNKLDSFTPLGYSSSGIVVEIGEGVSGFHVGQRVCCAGNQYATHAEYNWVPTNLCVPLPDGAPLDQAAFTTIAAIAL QAMRQSETRLGETVCVIGLGLIGQILVRLLRSAGVRTVGLDRLETRCRSAEAAGAVLCAVASDDSSEQFASRVTQLTAGN GVDCVFITAGSNDPDLAKRAAGLLRDRGRIVDIGKCTLNLPWNDFYDKELDVRFSRSYGPGRYDPLYEEGGIDYPIGQVR WTERRNMEAIVGLLADGRLDFSSLVTDVVAFDAAVSAFERLNKGSADSLGVLFSYAPDAARSDRIAYRPRAVASKDRVRL GVIGAGAYASSMLLPQLVSNDQVELVEVVTNTGLSGATAARKFGFARASTNASTVLEADDIDAVLIATRHASHADLAARA LRAGKAVFVEKPLALDRTSLARVIETVHQTGNDRLMVGFNRRFSPLLSSARDSFSSSGPQILHYRVVAGPLEKTSWYSQA ETEGSRFAGEGGHFIDALSWWVGSEPVRVTASAAGSDIDNLVATLTFDDGSVATLSYLTGGDSRVPKELLEASGSAGFVK FDNFSRVESWSKGSRSSKKAPLDKGQGPMLSAFVDCVRSGKPMPIPFQSLLATTRATLAVQESAATGLLVDLRSATPPEI ENELSASAIP
Sequences:
>Translated_730_residues MKQIAQNYKTGELKVIEVPAPRCRPGGVLVQTAFSAVSTGTELMKFSEGRLSLIGKARARPDQVAKVVRSVQQQGLLATY NKVMNKLDSFTPLGYSSSGIVVEIGEGVSGFHVGQRVCCAGNQYATHAEYNWVPTNLCVPLPDGAPLDQAAFTTIAAIAL QAMRQSETRLGETVCVIGLGLIGQILVRLLRSAGVRTVGLDRLETRCRSAEAAGAVLCAVASDDSSEQFASRVTQLTAGN GVDCVFITAGSNDPDLAKRAAGLLRDRGRIVDIGKCTLNLPWNDFYDKELDVRFSRSYGPGRYDPLYEEGGIDYPIGQVR WTERRNMEAIVGLLADGRLDFSSLVTDVVAFDAAVSAFERLNKGSADSLGVLFSYAPDAARSDRIAYRPRAVASKDRVRL GVIGAGAYASSMLLPQLVSNDQVELVEVVTNTGLSGATAARKFGFARASTNASTVLEADDIDAVLIATRHASHADLAARA LRAGKAVFVEKPLALDRTSLARVIETVHQTGNDRLMVGFNRRFSPLLSSARDSFSSSGPQILHYRVVAGPLEKTSWYSQA ETEGSRFAGEGGHFIDALSWWVGSEPVRVTASAAGSDIDNLVATLTFDDGSVATLSYLTGGDSRVPKELLEASGSAGFVK FDNFSRVESWSKGSRSSKKAPLDKGQGPMLSAFVDCVRSGKPMPIPFQSLLATTRATLAVQESAATGLLVDLRSATPPEI ENELSASAIP >Mature_730_residues MKQIAQNYKTGELKVIEVPAPRCRPGGVLVQTAFSAVSTGTELMKFSEGRLSLIGKARARPDQVAKVVRSVQQQGLLATY NKVMNKLDSFTPLGYSSSGIVVEIGEGVSGFHVGQRVCCAGNQYATHAEYNWVPTNLCVPLPDGAPLDQAAFTTIAAIAL QAMRQSETRLGETVCVIGLGLIGQILVRLLRSAGVRTVGLDRLETRCRSAEAAGAVLCAVASDDSSEQFASRVTQLTAGN GVDCVFITAGSNDPDLAKRAAGLLRDRGRIVDIGKCTLNLPWNDFYDKELDVRFSRSYGPGRYDPLYEEGGIDYPIGQVR WTERRNMEAIVGLLADGRLDFSSLVTDVVAFDAAVSAFERLNKGSADSLGVLFSYAPDAARSDRIAYRPRAVASKDRVRL GVIGAGAYASSMLLPQLVSNDQVELVEVVTNTGLSGATAARKFGFARASTNASTVLEADDIDAVLIATRHASHADLAARA LRAGKAVFVEKPLALDRTSLARVIETVHQTGNDRLMVGFNRRFSPLLSSARDSFSSSGPQILHYRVVAGPLEKTSWYSQA ETEGSRFAGEGGHFIDALSWWVGSEPVRVTASAAGSDIDNLVATLTFDDGSVATLSYLTGGDSRVPKELLEASGSAGFVK FDNFSRVESWSKGSRSSKKAPLDKGQGPMLSAFVDCVRSGKPMPIPFQSLLATTRATLAVQESAATGLLVDLRSATPPEI ENELSASAIP
Specific function: Unknown
COG id: COG1063
COG function: function code ER; Threonine dehydrogenase and related Zn-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gfo/idh/mocA family [H]
Homologues:
Organism=Escherichia coli, GI1788073, Length=297, Percent_Identity=26.2626262626263, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000683 - InterPro: IPR004104 [H]
Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]
EC number: NA
Molecular weight: Translated: 77860; Mature: 77860
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQIAQNYKTGELKVIEVPAPRCRPGGVLVQTAFSAVSTGTELMKFSEGRLSLIGKARAR CCCHHCCCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHCCHHHHHHCCCCEEEHCCCCCC PDQVAKVVRSVQQQGLLATYNKVMNKLDSFTPLGYSSSGIVVEIGEGVSGFHVGQRVCCA HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHCCCCEEC GNQYATHAEYNWVPTNLCVPLPDGAPLDQAAFTTIAAIALQAMRQSETRLGETVCVIGLG CCCCCCCCCCCEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LIGQILVRLLRSAGVRTVGLDRLETRCRSAEAAGAVLCAVASDDSSEQFASRVTQLTAGN HHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCC GVDCVFITAGSNDPDLAKRAAGLLRDRGRIVDIGKCTLNLPWNDFYDKELDVRFSRSYGP CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCC GRYDPLYEEGGIDYPIGQVRWTERRNMEAIVGLLADGRLDFSSLVTDVVAFDAAVSAFER CCCCCCHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH LNKGSADSLGVLFSYAPDAARSDRIAYRPRAVASKDRVRLGVIGAGAYASSMLLPQLVSN HCCCCCCCCEEEEEECCCCCCCCCEEECCCHHCCCCCEEEEEEECCHHHHHHHHHHHHCC DQVELVEVVTNTGLSGATAARKFGFARASTNASTVLEADDIDAVLIATRHASHADLAARA CCCEEHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHH LRAGKAVFVEKPLALDRTSLARVIETVHQTGNDRLMVGFNRRFSPLLSSARDSFSSSGPQ HHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC ILHYRVVAGPLEKTSWYSQAETEGSRFAGEGGHFIDALSWWVGSEPVRVTASAAGSDIDN EEEEEEEECCCHHHHCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCC LVATLTFDDGSVATLSYLTGGDSRVPKELLEASGSAGFVKFDNFSRVESWSKGSRSSKKA EEEEEEECCCCEEEEEEECCCCCCCHHHHHHCCCCCCEEEECCCHHHHHHCCCCCCCCCC PLDKGQGPMLSAFVDCVRSGKPMPIPFQSLLATTRATLAVQESAATGLLVDLRSATPPEI CCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCHH ENELSASAIP HHCCCCCCCC >Mature Secondary Structure MKQIAQNYKTGELKVIEVPAPRCRPGGVLVQTAFSAVSTGTELMKFSEGRLSLIGKARAR CCCHHCCCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHCCHHHHHHCCCCEEEHCCCCCC PDQVAKVVRSVQQQGLLATYNKVMNKLDSFTPLGYSSSGIVVEIGEGVSGFHVGQRVCCA HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHCCCCEEC GNQYATHAEYNWVPTNLCVPLPDGAPLDQAAFTTIAAIALQAMRQSETRLGETVCVIGLG CCCCCCCCCCCEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LIGQILVRLLRSAGVRTVGLDRLETRCRSAEAAGAVLCAVASDDSSEQFASRVTQLTAGN HHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCC GVDCVFITAGSNDPDLAKRAAGLLRDRGRIVDIGKCTLNLPWNDFYDKELDVRFSRSYGP CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCC GRYDPLYEEGGIDYPIGQVRWTERRNMEAIVGLLADGRLDFSSLVTDVVAFDAAVSAFER CCCCCCHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH LNKGSADSLGVLFSYAPDAARSDRIAYRPRAVASKDRVRLGVIGAGAYASSMLLPQLVSN HCCCCCCCCEEEEEECCCCCCCCCEEECCCHHCCCCCEEEEEEECCHHHHHHHHHHHHCC DQVELVEVVTNTGLSGATAARKFGFARASTNASTVLEADDIDAVLIATRHASHADLAARA CCCEEHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHH LRAGKAVFVEKPLALDRTSLARVIETVHQTGNDRLMVGFNRRFSPLLSSARDSFSSSGPQ HHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC ILHYRVVAGPLEKTSWYSQAETEGSRFAGEGGHFIDALSWWVGSEPVRVTASAAGSDIDN EEEEEEEECCCHHHHCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCC LVATLTFDDGSVATLSYLTGGDSRVPKELLEASGSAGFVKFDNFSRVESWSKGSRSSKKA EEEEEEECCCCEEEEEEECCCCCCCHHHHHHCCCCCCEEEECCCHHHHHHCCCCCCCCCC PLDKGQGPMLSAFVDCVRSGKPMPIPFQSLLATTRATLAVQESAATGLLVDLRSATPPEI CCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCHH ENELSASAIP HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7845353 [H]