Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 146343584

GI number: 146343584

Start: 7080106

End: 7081119

Strand: Reverse

Name: dppB [H]

Synonym: BRADO6822

Alternate gene names: 146343584

Gene position: 7081119-7080106 (Counterclockwise)

Preceding gene: 146343585

Following gene: 146343583

Centisome position: 94.96

GC content: 65.68

Gene sequence:

>1014_bases
ATGCTGAGCCTCGTCGCAAAGCGCCTCGCCTTCGCCATTCCGTCGCTGATCGGCGTCGTGATCGTCACCTTCCTGCTCAC
GCGCGCGCTGCCCGGCGATCCCGCCGCCTATTTCGCCGGCCCCGCCGCCACTAAGGAAGCCGTCGAGCAGATCCGCAAGA
AGCTCGGCTTCGACAAGCCGCTGGTCGAGCAGTTCTTCCGCTACACCGTCGATCTCGCCCATGGGGATCTCGGCAGCTCG
CTGACGACCGGCCAACCTGTCGCCACCGAAATTCGCAACCGCCTGCCGGCCTCGGCCGAACTGACACTGCTTGGCCTTCT
GGTCTCGGTTGCAATTGCGCTGCCGCTCGGCGTGCTCGCGGCGACGCGGCCGGGGTCATGGATCGACCACACCTGTCGCG
TCGTCACGACGGCCGGTGTTTCGCTGCCGGTGTTCTTCACCGGGCTCGTGCTGGTCTATGTGTTCTATTTCCGCCTCGGC
TGGTCGCCAGCGCCGCTCGGCCGGCTCGACGTGTTCTACAGCGCGCCGAACAGCGTGACCGGGTTCTATCTGATCGATAC
GCTGATCGCTGGTGACGGCGAGGCGTTCCGCTCGGCGCTGAGCCAGCTGATTCTGCCCGCGGCGACGCTCGCGATCTTCT
CGCTGGCGCCGGTCGCGCGCATGACACGGGCGTCGATGCTGTCGGTGCTGTCGTCGGAGTTCGTCCGCACCGCGCGCGCG
TCCGGCCTGTCGCCCTCGACGGTCACCGTCACCTACGCCTTCCGCAACGCGATGCTGCCGGTGATCACGACCCTGTCCAT
GGTGTTCTCCTTCCTGCTCGGCGCCAATGTGCTGGTGGAAAAGGTGTTCGCCTGGCCTGGCATCGGCTCCTATGCAGTCG
AGGCGCTGATCGCCTCCGACTTTGCGCCGGTGCAGGGCTTCGTGCTGACCATGGCGGTCATGTACGTCGTCCTCAACCTC
GTCATCGACATTCTCTATGGCGTCATCGACCCGCGTGTGAGGTTGGAAGGATGA

Upstream 100 bases:

>100_bases
TTCTCGGCTCACTCCTCTCTCCAACCCTCCCCCACAAGGGGGGAGGGAGCCGTCTGCTCTTTGCAGCGCGAACGGTACCC
ATTTCAGCGAGGCCCCGCCC

Downstream 100 bases:

>100_bases
GCACTGTCGCGCCGACCATTGAACCTGCCGCATCCGCCCGCACGTCCAGCATCGTGGCCCTGATCGGGCACACGCGCTAC
GTGCTCGCCGAAAACAAAGT

Product: putative dipeptide/oligopeptide/nickel ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MLSLVAKRLAFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGFDKPLVEQFFRYTVDLAHGDLGSS
LTTGQPVATEIRNRLPASAELTLLGLLVSVAIALPLGVLAATRPGSWIDHTCRVVTTAGVSLPVFFTGLVLVYVFYFRLG
WSPAPLGRLDVFYSAPNSVTGFYLIDTLIAGDGEAFRSALSQLILPAATLAIFSLAPVARMTRASMLSVLSSEFVRTARA
SGLSPSTVTVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASDFAPVQGFVLTMAVMYVVLNL
VIDILYGVIDPRVRLEG

Sequences:

>Translated_337_residues
MLSLVAKRLAFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGFDKPLVEQFFRYTVDLAHGDLGSS
LTTGQPVATEIRNRLPASAELTLLGLLVSVAIALPLGVLAATRPGSWIDHTCRVVTTAGVSLPVFFTGLVLVYVFYFRLG
WSPAPLGRLDVFYSAPNSVTGFYLIDTLIAGDGEAFRSALSQLILPAATLAIFSLAPVARMTRASMLSVLSSEFVRTARA
SGLSPSTVTVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASDFAPVQGFVLTMAVMYVVLNL
VIDILYGVIDPRVRLEG
>Mature_337_residues
MLSLVAKRLAFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGFDKPLVEQFFRYTVDLAHGDLGSS
LTTGQPVATEIRNRLPASAELTLLGLLVSVAIALPLGVLAATRPGSWIDHTCRVVTTAGVSLPVFFTGLVLVYVFYFRLG
WSPAPLGRLDVFYSAPNSVTGFYLIDTLIAGDGEAFRSALSQLILPAATLAIFSLAPVARMTRASMLSVLSSEFVRTARA
SGLSPSTVTVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASDFAPVQGFVLTMAVMYVVLNL
VIDILYGVIDPRVRLEG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=40.2366863905325, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1787761, Length=331, Percent_Identity=45.3172205438066, Blast_Score=260, Evalue=8e-71,
Organism=Escherichia coli, GI1787053, Length=336, Percent_Identity=35.7142857142857, Blast_Score=227, Evalue=9e-61,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=33.5311572700297, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1787497, Length=336, Percent_Identity=29.1666666666667, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=31.7164179104478, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1788504, Length=376, Percent_Identity=26.3297872340426, Blast_Score=126, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35995; Mature: 35995

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLVAKRLAFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGFDKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCH
LVEQFFRYTVDLAHGDLGSSLTTGQPVATEIRNRLPASAELTLLGLLVSVAIALPLGVLA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ATRPGSWIDHTCRVVTTAGVSLPVFFTGLVLVYVFYFRLGWSPAPLGRLDVFYSAPNSVT
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCCH
GFYLIDTLIAGDGEAFRSALSQLILPAATLAIFSLAPVARMTRASMLSVLSSEFVRTARA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLSPSTVTVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
FAPVQGFVLTMAVMYVVLNLVIDILYGVIDPRVRLEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MLSLVAKRLAFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAATKEAVEQIRKKLGFDKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCH
LVEQFFRYTVDLAHGDLGSSLTTGQPVATEIRNRLPASAELTLLGLLVSVAIALPLGVLA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ATRPGSWIDHTCRVVTTAGVSLPVFFTGLVLVYVFYFRLGWSPAPLGRLDVFYSAPNSVT
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCCH
GFYLIDTLIAGDGEAFRSALSQLILPAATLAIFSLAPVARMTRASMLSVLSSEFVRTARA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLSPSTVTVTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALIASD
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
FAPVQGFVLTMAVMYVVLNLVIDILYGVIDPRVRLEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]