Click here to switch to the map view.

The map label for this gene is ddpC [H]

Identifier: 146343583

GI number: 146343583

Start: 7079210

End: 7080109

Strand: Reverse

Name: ddpC [H]

Synonym: BRADO6821

Alternate gene names: 146343583

Gene position: 7080109-7079210 (Counterclockwise)

Preceding gene: 146343584

Following gene: 146343582

Centisome position: 94.95

GC content: 66.0

Gene sequence:

>900_bases
ATGAGCACTGTCGCGCCGACCATTGAACCTGCCGCATCCGCCCGCACGTCCAGCATCGTGGCCCTGATCGGGCACACGCG
CTACGTGCTCGCCGAAAACAAAGTCACCGGCTTCGCCTTCGGGCTGCTGGTGGTCATCTTGTTCGCGGCGGTCCTCGGGC
CGTGGATCGTGCCTTATGACCCGTTGGCCAGCGATACGGCATCCGCATTGAAGCCGCCATCGGCGGCGCACTGGTTCGGC
ACCGATCAGCTCGGCCGTGACATCTTCAGCCGCGTCGTGGTCGCGACCCGGCTCGACACCTTCATCGCGGTGGCCTCGGT
CGCGCTGGTGTTTTTCATGGGCGGCCTCGCCGGAGTCGCAGCCGGGTTCTTCGGCGGCTGGACCGACCGCATCGTCGGAC
GCGTCGCCGACACCATCATGGCGTTCCCGCTGTTCGTGCTGGCGATGGGCATCGTCGCCGCGCTCGGCAACACCGTGCAG
AACATCATCATCGCCACCGCGATCGTGAACTTCCCACTATATGCGCGCGTCGCGCGCGCGGAAGCCAATGTCCGCCGCAA
TGCCGGCTTCGTGCAGGCGGCACGGCTGTCGGGCAACAGCGAGATGCGCATCTTGCTCGGCCACATCCTGCCCAACATCA
TGCCGATCATGATCGTGCAGATGTCGCTCACCATGGGCTACGCGATCCTCAACGCAGCGGGCCTGTCCTTCATCGGCCTC
GGCGTGCGGCCGCCCACGGCGGAATGGGGCATCATGGTCGCCGAAGGCGCGTCCTTCATGGTGTCGGGGGAATGGTGGAT
CGCGCTGTTCCCCGGCCTGGCGCTGATGATCGCCGTGTTCTGCTTCAACCTGCTCGGCGACGGTCTGCGTGACATCGTCG
ACCCGCAGCGCAGGACGTGA

Upstream 100 bases:

>100_bases
TGCAGGGCTTCGTGCTGACCATGGCGGTCATGTACGTCGTCCTCAACCTCGTCATCGACATTCTCTATGGCGTCATCGAC
CCGCGTGTGAGGTTGGAAGG

Downstream 100 bases:

>100_bases
GGCGATGAGCGGACCACACCAAAACTCCGTCATTGCCGGGCTCGACCCGGCAATCCATCGACCGACGACGAACTTGTTGG
TTTTGATGGATGCGCAGGCC

Product: putative dipeptide/oligopeptide/nickel ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSTVAPTIEPAASARTSSIVALIGHTRYVLAENKVTGFAFGLLVVILFAAVLGPWIVPYDPLASDTASALKPPSAAHWFG
TDQLGRDIFSRVVVATRLDTFIAVASVALVFFMGGLAGVAAGFFGGWTDRIVGRVADTIMAFPLFVLAMGIVAALGNTVQ
NIIIATAIVNFPLYARVARAEANVRRNAGFVQAARLSGNSEMRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL
GVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT

Sequences:

>Translated_299_residues
MSTVAPTIEPAASARTSSIVALIGHTRYVLAENKVTGFAFGLLVVILFAAVLGPWIVPYDPLASDTASALKPPSAAHWFG
TDQLGRDIFSRVVVATRLDTFIAVASVALVFFMGGLAGVAAGFFGGWTDRIVGRVADTIMAFPLFVLAMGIVAALGNTVQ
NIIIATAIVNFPLYARVARAEANVRRNAGFVQAARLSGNSEMRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL
GVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT
>Mature_298_residues
STVAPTIEPAASARTSSIVALIGHTRYVLAENKVTGFAFGLLVVILFAAVLGPWIVPYDPLASDTASALKPPSAAHWFGT
DQLGRDIFSRVVVATRLDTFIAVASVALVFFMGGLAGVAAGFFGGWTDRIVGRVADTIMAFPLFVLAMGIVAALGNTVQN
IIIATAIVNFPLYARVARAEANVRRNAGFVQAARLSGNSEMRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGLG
VRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=255, Percent_Identity=44.7058823529412, Blast_Score=225, Evalue=2e-60,
Organism=Escherichia coli, GI1787054, Length=256, Percent_Identity=42.1875, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=43.2098765432099, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1789964, Length=259, Percent_Identity=40.9266409266409, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1787498, Length=296, Percent_Identity=30.0675675675676, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1787549, Length=256, Percent_Identity=30.859375, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=25.5506607929515, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31725; Mature: 31594

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVAPTIEPAASARTSSIVALIGHTRYVLAENKVTGFAFGLLVVILFAAVLGPWIVPYD
CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PLASDTASALKPPSAAHWFGTDQLGRDIFSRVVVATRLDTFIAVASVALVFFMGGLAGVA
CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFFGGWTDRIVGRVADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EANVRRNAGFVQAARLSGNSEMRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL
HHHHHHCCCHHEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEC
GVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT
CCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
STVAPTIEPAASARTSSIVALIGHTRYVLAENKVTGFAFGLLVVILFAAVLGPWIVPYD
CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PLASDTASALKPPSAAHWFGTDQLGRDIFSRVVVATRLDTFIAVASVALVFFMGGLAGVA
CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFFGGWTDRIVGRVADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EANVRRNAGFVQAARLSGNSEMRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL
HHHHHHCCCHHEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEC
GVRPPTAEWGIMVAEGASFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQRRT
CCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]