| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is polC [H]
Identifier: 146341316
GI number: 146341316
Start: 4596533
End: 4598746
Strand: Direct
Name: polC [H]
Synonym: BRADO4398
Alternate gene names: 146341316
Gene position: 4596533-4598746 (Clockwise)
Preceding gene: 146341315
Following gene: 146341325
Centisome position: 61.64
GC content: 61.52
Gene sequence:
>2214_bases ATGCCGGGGGACCGTCGTCGACCGAGGCCGCAGGAAATCGGCGCGTATCACATGAAGCCCACCACGTTGCCGGTCTACTA TTATCTCGACCACTTCGTCGAAATGCTGGAGTTCGTGGAGAGGACATATGACGAGATCCTCAGCGACGAGGACCGTGCAT TCACCTCAAGCTTTCGCGGTCTTTCCAAAGACGCGCAGTGCCTCTTGATCCGCATGGTCAACCGACGTGGGACGATCTTC AACCGCGCGCTCTTCAAGTACCCGGAGATTACGGACCTCGAGTCCGCCGCTCGAAACCTGATCGCTTGCGGATATGCCCG TGGTCTTCGTGCCGACGATTATTCCGCTTTCCTGCTCTGCCAACCGAAGACCGCTCTTCTCGACGGCGCCCGGGCGGCGG GATTCGGCCGCGATATACGCGCGTCCTGGTCGAAGCCGGCACTGGCCGACTTTTTCCTGGCAACAATTCCCTTCGATGTT GCCGCGATGCATTGCGGCGCCGTGGGCTTCATAGCCCTCGACAACACGCGGTCCATCGACTTTCTGCTGTATCTCTATTT CGGCAAGACGGCGGACAGTCTCAAGAACTTCGCTCTGCGAGATCTCGGCGTGCTGCGCACGAACAAGGAGACGTCGTTCA GCTCTCGCTTTGTCGACGCCGACGAGGCGCATGCCTGTTTTCACTACAGCCAGGTGCTGAACCGAATCGAAGCTCGTTCC GTCGATATCTATCAGTTGGCGGTTAAGGCGATCCTCGACGGTCCGCCGCGGACGAGCGACTACGCCGCCGATCTCGCGTC TCGCGCCGCGTGTCAGGTCGGACAGTATTTCGAGAAACAGGGCGAACTGGATGTTGCCGAGCGCCTCTATCGTTTCGGCC AGTCGGCGGACTGCCGCGAGCGCCTCGTCCGGCTGCTGTACACCCGAGGCGAGAAGGACGCCGCCGAGCTTCTGTTGCGG GAGATGATCGACGATCCCGAAAGCGACGATGAGCACCTCTTCGCCATGGACTTCTACGCCCGCAAGTTCGGCAAGCAACG GACGGGCCTCAGCACTGCGTTGCTGCGATCCGGGCGCTTGATCGTCGTCGACGATACGCACCGCGGTCATCCGGAAGCAG GCGTCGCCGGCGTACTGAGACGTCGGGGCGGCGACGTCTATTTCGCCGAGAATACGCTGTGGCTCACGCTGTTCGGGCTA CTGTTCTGGGATGAGCTTTTCGAATCCGGCCAGCTCAACAGCCTGTTCGACTGGGTTCCGCATTGCCTTCGCGACCGGAC TTTTCATCGGCGTTTCGCCGCGCAGATCGATGCGAAGCTCGCGCAGATCAAATCCGGACAGGGACTGCCCATCATCCTGC GTGTGGTCGCCTCCAAATGGGGCCGGTCCAACGGACTGTTCGCTTGGGAGCACGTGCAGATCGACGCGCTACGCGCCTTG CTCGCCTGTGCCAATGCGGACGGCTTGGCTGCGATTCTTCGGGCGATGTGCGAGGACTTCTGCGGCATGCGGGACGGCTT CCCCGACCTGATGCAGGTGCGCGACGGAAAAGTGACGTTCGTCGAGGTCAAGGCCGAGGGCGACGCCATACGCCGCAATC AGTTGACGCGTCTGCGTCAGCTGGAGCAGGCCGGCATACCGGCCGAGATCGGCCGCGTGGATTACCGCTTCGACCCGGAG CAAGACTACGTCGTCGTCGACATCGAGACCACGGGCTCCTGGTCATCGGGTGATCGCATCACCGAAATCGGAGCGGTGAA GGTCCGCAATCATCAACTGGTCGAGCAGTGGCACTCGCTGATCAACCCGCAGCGGCCGATCCCCGCGAAGATCGTCGAAC TAACCGGCATCACCAACCAGATGGTTCGGGATGCGCCCGTTTTTCACGAGATCGCCGACAGTTTCATGGCGTTCATGGGG GACGGCATCTTCGTGGCCCACAATGTGAATTTCGATTACGGATTCTTGTCGAGCGAGTTCGAGCGGCTCGAACGGCGCTT CCGCTTCCCGAAGCTGTGCACCTGCGTCGGAATGCGGCGCCGATATCCCGGGCACACATCATATGGGCTGGGAAAGCTGT GCGCGATCTACGGCATCGAGCTGGACGACCACCATCGAGCGCTCTGCGACGCTCGGGCGGCAGCCCACCTGCTGAATCTC ATCAACACGAAGCGCGTCGAAGAGGCGGAGGCTGACGCGGTTCAGGCGGCGTAG
Upstream 100 bases:
>100_bases CGAGTTCAGGCGATTTTCGCTCGACCAAACCCCCGAGGAAGATGCTTCACCTTGACAAATCGCACATTCGGAACAAAAAA GGAACGAACGACTCGGCCGA
Downstream 100 bases:
>100_bases TCGCTCGGAGTACGGCGAGAGGTGGGGCAGCGCGTGTGTCATCGACGTCGGTCATGACGGCTCCTCGAACAAGCCGATCG AGAACTCTCTCGCAAGCGTC
Product: DNA-directed DNA polymerase
Products: NA
Alternate protein names: PolIII [H]
Number of amino acids: Translated: 737; Mature: 736
Protein sequence:
>737_residues MPGDRRRPRPQEIGAYHMKPTTLPVYYYLDHFVEMLEFVERTYDEILSDEDRAFTSSFRGLSKDAQCLLIRMVNRRGTIF NRALFKYPEITDLESAARNLIACGYARGLRADDYSAFLLCQPKTALLDGARAAGFGRDIRASWSKPALADFFLATIPFDV AAMHCGAVGFIALDNTRSIDFLLYLYFGKTADSLKNFALRDLGVLRTNKETSFSSRFVDADEAHACFHYSQVLNRIEARS VDIYQLAVKAILDGPPRTSDYAADLASRAACQVGQYFEKQGELDVAERLYRFGQSADCRERLVRLLYTRGEKDAAELLLR EMIDDPESDDEHLFAMDFYARKFGKQRTGLSTALLRSGRLIVVDDTHRGHPEAGVAGVLRRRGGDVYFAENTLWLTLFGL LFWDELFESGQLNSLFDWVPHCLRDRTFHRRFAAQIDAKLAQIKSGQGLPIILRVVASKWGRSNGLFAWEHVQIDALRAL LACANADGLAAILRAMCEDFCGMRDGFPDLMQVRDGKVTFVEVKAEGDAIRRNQLTRLRQLEQAGIPAEIGRVDYRFDPE QDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMVRDAPVFHEIADSFMAFMG DGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNL INTKRVEEAEADAVQAA
Sequences:
>Translated_737_residues MPGDRRRPRPQEIGAYHMKPTTLPVYYYLDHFVEMLEFVERTYDEILSDEDRAFTSSFRGLSKDAQCLLIRMVNRRGTIF NRALFKYPEITDLESAARNLIACGYARGLRADDYSAFLLCQPKTALLDGARAAGFGRDIRASWSKPALADFFLATIPFDV AAMHCGAVGFIALDNTRSIDFLLYLYFGKTADSLKNFALRDLGVLRTNKETSFSSRFVDADEAHACFHYSQVLNRIEARS VDIYQLAVKAILDGPPRTSDYAADLASRAACQVGQYFEKQGELDVAERLYRFGQSADCRERLVRLLYTRGEKDAAELLLR EMIDDPESDDEHLFAMDFYARKFGKQRTGLSTALLRSGRLIVVDDTHRGHPEAGVAGVLRRRGGDVYFAENTLWLTLFGL LFWDELFESGQLNSLFDWVPHCLRDRTFHRRFAAQIDAKLAQIKSGQGLPIILRVVASKWGRSNGLFAWEHVQIDALRAL LACANADGLAAILRAMCEDFCGMRDGFPDLMQVRDGKVTFVEVKAEGDAIRRNQLTRLRQLEQAGIPAEIGRVDYRFDPE QDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMVRDAPVFHEIADSFMAFMG DGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNL INTKRVEEAEADAVQAA >Mature_736_residues PGDRRRPRPQEIGAYHMKPTTLPVYYYLDHFVEMLEFVERTYDEILSDEDRAFTSSFRGLSKDAQCLLIRMVNRRGTIFN RALFKYPEITDLESAARNLIACGYARGLRADDYSAFLLCQPKTALLDGARAAGFGRDIRASWSKPALADFFLATIPFDVA AMHCGAVGFIALDNTRSIDFLLYLYFGKTADSLKNFALRDLGVLRTNKETSFSSRFVDADEAHACFHYSQVLNRIEARSV DIYQLAVKAILDGPPRTSDYAADLASRAACQVGQYFEKQGELDVAERLYRFGQSADCRERLVRLLYTRGEKDAAELLLRE MIDDPESDDEHLFAMDFYARKFGKQRTGLSTALLRSGRLIVVDDTHRGHPEAGVAGVLRRRGGDVYFAENTLWLTLFGLL FWDELFESGQLNSLFDWVPHCLRDRTFHRRFAAQIDAKLAQIKSGQGLPIILRVVASKWGRSNGLFAWEHVQIDALRALL ACANADGLAAILRAMCEDFCGMRDGFPDLMQVRDGKVTFVEVKAEGDAIRRNQLTRLRQLEQAGIPAEIGRVDYRFDPEQ DYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMVRDAPVFHEIADSFMAFMGD GIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNLI NTKRVEEAEADAVQAA
Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 exonuclease domain [H]
Homologues:
Organism=Escherichia coli, GI1786409, Length=166, Percent_Identity=34.3373493975904, Blast_Score=84, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011708 - InterPro: IPR006054 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR016027 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR006308 - InterPro: IPR012337 [H]
Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 83354; Mature: 83223
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGDRRRPRPQEIGAYHMKPTTLPVYYYLDHFVEMLEFVERTYDEILSDEDRAFTSSFRG CCCCCCCCCHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC LSKDAQCLLIRMVNRRGTIFNRALFKYPEITDLESAARNLIACGYARGLRADDYSAFLLC CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE QPKTALLDGARAAGFGRDIRASWSKPALADFFLATIPFDVAAMHCGAVGFIALDNTRSID CCHHHHHCCCHHCCCCCCHHCCCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCCE FLLYLYFGKTADSLKNFALRDLGVLRTNKETSFSSRFVDADEAHACFHYSQVLNRIEARS EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCC VDIYQLAVKAILDGPPRTSDYAADLASRAACQVGQYFEKQGELDVAERLYRFGQSADCRE CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHH RLVRLLYTRGEKDAAELLLREMIDDPESDDEHLFAMDFYARKFGKQRTGLSTALLRSGRL HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCHHCCHHHHHHHCCCE IVVDDTHRGHPEAGVAGVLRRRGGDVYFAENTLWLTLFGLLFWDELFESGQLNSLFDWVP EEEECCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH HCLRDRTFHRRFAAQIDAKLAQIKSGQGLPIILRVVASKWGRSNGLFAWEHVQIDALRAL HHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH LACANADGLAAILRAMCEDFCGMRDGFPDLMQVRDGKVTFVEVKAEGDAIRRNQLTRLRQ HHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHH LEQAGIPAEIGRVDYRFDPEQDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSL HHHCCCCHHHCCCCEEECCCCCEEEEEEEECCCCCCCCCEEEECEEEECCHHHHHHHHHH INPQRPIPAKIVELTGITNQMVRDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEF CCCCCCCCHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH ERLERRFRFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNL HHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH INTKRVEEAEADAVQAA HHHHHHHHHHHHHHCCC >Mature Secondary Structure PGDRRRPRPQEIGAYHMKPTTLPVYYYLDHFVEMLEFVERTYDEILSDEDRAFTSSFRG CCCCCCCCHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC LSKDAQCLLIRMVNRRGTIFNRALFKYPEITDLESAARNLIACGYARGLRADDYSAFLLC CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE QPKTALLDGARAAGFGRDIRASWSKPALADFFLATIPFDVAAMHCGAVGFIALDNTRSID CCHHHHHCCCHHCCCCCCHHCCCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCCE FLLYLYFGKTADSLKNFALRDLGVLRTNKETSFSSRFVDADEAHACFHYSQVLNRIEARS EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCC VDIYQLAVKAILDGPPRTSDYAADLASRAACQVGQYFEKQGELDVAERLYRFGQSADCRE CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHH RLVRLLYTRGEKDAAELLLREMIDDPESDDEHLFAMDFYARKFGKQRTGLSTALLRSGRL HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCHHCCHHHHHHHCCCE IVVDDTHRGHPEAGVAGVLRRRGGDVYFAENTLWLTLFGLLFWDELFESGQLNSLFDWVP EEEECCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH HCLRDRTFHRRFAAQIDAKLAQIKSGQGLPIILRVVASKWGRSNGLFAWEHVQIDALRAL HHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH LACANADGLAAILRAMCEDFCGMRDGFPDLMQVRDGKVTFVEVKAEGDAIRRNQLTRLRQ HHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHH LEQAGIPAEIGRVDYRFDPEQDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSL HHHCCCCHHHCCCCEEECCCCCEEEEEEEECCCCCCCCCEEEECEEEECCHHHHHHHHHH INPQRPIPAKIVELTGITNQMVRDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEF CCCCCCCCHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH ERLERRFRFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNL HHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH INTKRVEEAEADAVQAA HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11792842 [H]