| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is mrcA [H]
Identifier: 146340473
GI number: 146340473
Start: 3700824
End: 3703337
Strand: Direct
Name: mrcA [H]
Synonym: BRADO3514
Alternate gene names: 146340473
Gene position: 3700824-3703337 (Clockwise)
Preceding gene: 146340472
Following gene: 146340475
Centisome position: 49.63
GC content: 65.31
Gene sequence:
>2514_bases TTGCCGATGCGCTTTCTGGTGCGGTTTTTGGGCTTCCTGTTCGCGGCCGGTACCGTTGTGTTCCTCGTCGGCGTTGCGGC GGCAGCGGGCCTGATCTGGCATTTCTCCAAGGATCTTCCCGACTATTCCCAGCTGCAGGATTACGAGCCTCCGGTCATGA CACGGGTTCACGCGGCTGACGGCTCCCTGGTCGGCGAATACGCCAGGGAGCGCCGGCTCTATCTGCCGATCCAGGCGGTT CCCAAGCTCGTCATCAACGCCTTCCTCGCCGCCGAGGACAAGAACTTCTATGAGCACGGCGGCATCGATTTCACCGGCAT GGCGCGTGCCGCGGTCGTCTACGCCCAGAACTTTGGCTCGAATCGCCGCCCGCAGGGCGCGTCGACGATCACCCAGCAGG TCGCCAAGAACTTCCTTCTGACCAACGAGGTCTCGTTCGCGCGCAAGATCAAGGAAGCGTTGCTGGCGATGCGCATCGAG CGCACCTATTCCAAGGACAAGATCCTCGAGCTGTACCTGAACGAGATCTATCTCGGGTCCGGCGCCTATGGCATCGCGGC GGCGTCGCTGGTGTATTTCGACAAATCGGTCAACGAGCTCACGGTCGCGGAGGCGTCGTATCTCGCCGCGCTCCCGAAGA TGCCGGGCAGCCTGCATCCGATCCGCAATCGCGACCGCGCCATCGAGCGCCGCAACTACGTCGTCGACCGTCTGCTGGAG AACGGCTGGATCAAGCAGGCCGACGCCGAGAAGGCGCGCAAGGATCCGCTGACGATCGCGAGCCGCAATACCGGCGCTCA CATCTTCGCCGGCGAATACTTCGCCGAGGAGGTGCGCCGCGACATCTTCGAGCGCTATGGCGAGAAGAAGCTTTACGAAG GCGGCCTCTCGGTCCGCACCACGCTCGACCCGAAGATCCAGGTCATGGCGCGTAAGGCAATGGTCGCCGGCCTCGTTCGC TATGACCAGGAGCAGGGCTATCGGGGACCCGTGTCCAAGCTCGACACCTCCGGCGACTGGGGCCTCAAGCTCGCGGAAAT CAAATCGCTCTCGGACATCTCGCCGTGGCGGATGGCGGTGGTGCTCGAGACCAGCGACCAGTCCGCCCGCATCGGGTTCC AGCCGCCGCGCGAGCTCGGCGGCGCCGTCAGCAAGGAGCGGCAGACGGGTCTGATCACGCTTGACGGCGTGAAATGGGCG CGCGCGGCGACCGGCAATGGCCGCGGCAAGGTGCCTACGTCGGTCGCCCAGGTGCTGCAGCCGGGCGACGTGATCTACGC CGATCCGCTGTTCAAGGAAGGCAACCCGGTCGAGGGCCAGTATCGTCTCGAGCAGCTGCCCGAGGTGTCCGGCGCGATGG TCGCCATGGACCCCAACACCGGGCGCGTGCTCGCCATGGTCGGCGGCTTCTCGTTCGATCAAAGCCAGTTCAATCGCGCC ACGCAGGCCTATCGTCAGCCTGGTTCGTCGTTCAAGCCGATCGTCTACTCCTCGGCGCTCGACAATGGCTACACGCCCTC GACCCAGGTCGTCGACGCGCCGATCGAGATCGACCAGGGGCAGGGTGGCCAGGTCTGGCGTCCTGACAACTTCTCCAACG GCAAGTATCTCGGACCCACGACCCTGCGCAACGCGCTGCGGCTGTCGCTGAACACGGTGACGGTGCGCCTCGCGCAGGAC GTCGGCATGCCCTTGATCTCGGAATATGCGCGCCGCTTCGGCGTCTATGACGAACTGCCGAATTATCTCTCCTACGCGCT CGGTGCCGGCGAGACCACGGCCATGCGCATGGTCACGGCGTACTCGATGATTGCCAATGGCGGCCGCCGGGTGAAGCCGA CCCTGATCGACCGTATCCAGGACCGCTACGGCCACACCATCTTCAAGCACGATGCCCGCGAGTGCCGCGGCTGCGACGCG CCGGACGGCTGGAAGAACCAGAGCGAGCCGCAACTGGTCGACCGCCGTGAGCAGGTGCTGGATACGATGACGGCCTACCA GATCACCTCGATGCTCGAGGGCGTGGTTCAGGCCGGCACGGCGACCGTGCTCAAGGAGGTCGGCAAGCCGATCGCCGGCA AGACGGGAACCACCAACGAGGCCAAGGACGCCTGGTTCGTCGGCTTCTCGCCTGACCTCGCGGTCGCGATCTACATGGGC TACGACAAGCCGCGTCCGCTCGGCAAAGGCAACGCCGCGACCGGTGGCCATCTTGCTGCGCCGATCGCCAAGGACTTCAT GAAGCTCGCACTGGCCGACAAGCCGGCGACCCCGTTCAAGATCCCGGCCGGCATCAAGCTGGTACGAGTCGACGCCAAGA CCGGCATGCGCGCAGGGCCTGGCGATTCGGGCCGGACCATCATGGAGGCGTTCAAGCCGGGCACGGCGCCGCCGGACAAC TACTCGGTGATCGGCGTAGCGGATGCCGATGGGCGGATGATGCCGCCGCAGAACGGCGGTCAGCCCGACTCCGGCAACTT CATCATTCGTCCGGGCACCGGCAGCCTGTACTAG
Upstream 100 bases:
>100_bases ATCGGTCACGTGGCATTGCAGCCGACCGCGCGATCCTGGCGGCAGCGTCCGGGCGCTTGGGCGTCCGAGCCGAGAGACGA ACAAGAGTTGGAACGGATAT
Downstream 100 bases:
>100_bases GCCCCGTGAAACTCCGGACGATGCGGTGCATGGCGATTGCGCTTTGCACCGCGCGCCGCTACATCCCCAGCGAGACATGA CCGCCGCGGCGAGTTCGGCT
Product: putative membrane carboxypeptidase/penicillin-binding protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 837; Mature: 836
Protein sequence:
>837_residues MPMRFLVRFLGFLFAAGTVVFLVGVAAAAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAADGSLVGEYARERRLYLPIQAV PKLVINAFLAAEDKNFYEHGGIDFTGMARAAVVYAQNFGSNRRPQGASTITQQVAKNFLLTNEVSFARKIKEALLAMRIE RTYSKDKILELYLNEIYLGSGAYGIAAASLVYFDKSVNELTVAEASYLAALPKMPGSLHPIRNRDRAIERRNYVVDRLLE NGWIKQADAEKARKDPLTIASRNTGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTLDPKIQVMARKAMVAGLVR YDQEQGYRGPVSKLDTSGDWGLKLAEIKSLSDISPWRMAVVLETSDQSARIGFQPPRELGGAVSKERQTGLITLDGVKWA RAATGNGRGKVPTSVAQVLQPGDVIYADPLFKEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVLAMVGGFSFDQSQFNRA TQAYRQPGSSFKPIVYSSALDNGYTPSTQVVDAPIEIDQGQGGQVWRPDNFSNGKYLGPTTLRNALRLSLNTVTVRLAQD VGMPLISEYARRFGVYDELPNYLSYALGAGETTAMRMVTAYSMIANGGRRVKPTLIDRIQDRYGHTIFKHDARECRGCDA PDGWKNQSEPQLVDRREQVLDTMTAYQITSMLEGVVQAGTATVLKEVGKPIAGKTGTTNEAKDAWFVGFSPDLAVAIYMG YDKPRPLGKGNAATGGHLAAPIAKDFMKLALADKPATPFKIPAGIKLVRVDAKTGMRAGPGDSGRTIMEAFKPGTAPPDN YSVIGVADADGRMMPPQNGGQPDSGNFIIRPGTGSLY
Sequences:
>Translated_837_residues MPMRFLVRFLGFLFAAGTVVFLVGVAAAAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAADGSLVGEYARERRLYLPIQAV PKLVINAFLAAEDKNFYEHGGIDFTGMARAAVVYAQNFGSNRRPQGASTITQQVAKNFLLTNEVSFARKIKEALLAMRIE RTYSKDKILELYLNEIYLGSGAYGIAAASLVYFDKSVNELTVAEASYLAALPKMPGSLHPIRNRDRAIERRNYVVDRLLE NGWIKQADAEKARKDPLTIASRNTGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTLDPKIQVMARKAMVAGLVR YDQEQGYRGPVSKLDTSGDWGLKLAEIKSLSDISPWRMAVVLETSDQSARIGFQPPRELGGAVSKERQTGLITLDGVKWA RAATGNGRGKVPTSVAQVLQPGDVIYADPLFKEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVLAMVGGFSFDQSQFNRA TQAYRQPGSSFKPIVYSSALDNGYTPSTQVVDAPIEIDQGQGGQVWRPDNFSNGKYLGPTTLRNALRLSLNTVTVRLAQD VGMPLISEYARRFGVYDELPNYLSYALGAGETTAMRMVTAYSMIANGGRRVKPTLIDRIQDRYGHTIFKHDARECRGCDA PDGWKNQSEPQLVDRREQVLDTMTAYQITSMLEGVVQAGTATVLKEVGKPIAGKTGTTNEAKDAWFVGFSPDLAVAIYMG YDKPRPLGKGNAATGGHLAAPIAKDFMKLALADKPATPFKIPAGIKLVRVDAKTGMRAGPGDSGRTIMEAFKPGTAPPDN YSVIGVADADGRMMPPQNGGQPDSGNFIIRPGTGSLY >Mature_836_residues PMRFLVRFLGFLFAAGTVVFLVGVAAAAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAADGSLVGEYARERRLYLPIQAVP KLVINAFLAAEDKNFYEHGGIDFTGMARAAVVYAQNFGSNRRPQGASTITQQVAKNFLLTNEVSFARKIKEALLAMRIER TYSKDKILELYLNEIYLGSGAYGIAAASLVYFDKSVNELTVAEASYLAALPKMPGSLHPIRNRDRAIERRNYVVDRLLEN GWIKQADAEKARKDPLTIASRNTGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTLDPKIQVMARKAMVAGLVRY DQEQGYRGPVSKLDTSGDWGLKLAEIKSLSDISPWRMAVVLETSDQSARIGFQPPRELGGAVSKERQTGLITLDGVKWAR AATGNGRGKVPTSVAQVLQPGDVIYADPLFKEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVLAMVGGFSFDQSQFNRAT QAYRQPGSSFKPIVYSSALDNGYTPSTQVVDAPIEIDQGQGGQVWRPDNFSNGKYLGPTTLRNALRLSLNTVTVRLAQDV GMPLISEYARRFGVYDELPNYLSYALGAGETTAMRMVTAYSMIANGGRRVKPTLIDRIQDRYGHTIFKHDARECRGCDAP DGWKNQSEPQLVDRREQVLDTMTAYQITSMLEGVVQAGTATVLKEVGKPIAGKTGTTNEAKDAWFVGFSPDLAVAIYMGY DKPRPLGKGNAATGGHLAAPIAKDFMKLALADKPATPFKIPAGIKLVRVDAKTGMRAGPGDSGRTIMEAFKPGTAPPDNY SVIGVADADGRMMPPQNGGQPDSGNFIIRPGTGSLY
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=859, Percent_Identity=34.6915017462165, Blast_Score=456, Evalue=1e-129, Organism=Escherichia coli, GI1786343, Length=274, Percent_Identity=35.7664233576642, Blast_Score=149, Evalue=8e-37, Organism=Escherichia coli, GI1788867, Length=211, Percent_Identity=34.1232227488152, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1789601, Length=153, Percent_Identity=41.1764705882353, Blast_Score=95, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 91528; Mature: 91397
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMRFLVRFLGFLFAAGTVVFLVGVAAAAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAAD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHEEEECCC GSLVGEYARERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDFTGMARAAVVYAQNFGS CHHHHHHHHCCEEECCHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHCCC NRRPQGASTITQQVAKNFLLTNEVSFARKIKEALLAMRIERTYSKDKILELYLNEIYLGS CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECC GAYGIAAASLVYFDKSVNELTVAEASYLAALPKMPGSLHPIRNRDRAIERRNYVVDRLLE CCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH NGWIKQADAEKARKDPLTIASRNTGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRT CCCCCCCCHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHCCCCEEEE TLDPKIQVMARKAMVAGLVRYDQEQGYRGPVSKLDTSGDWGLKLAEIKSLSDISPWRMAV ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEHHHHHCCCCCCCEEEEE VLETSDQSARIGFQPPRELGGAVSKERQTGLITLDGVKWARAATGNGRGKVPTSVAQVLQ EEEECCCCCCCCCCCCHHHCCCHHHHCCCCEEEECCCCEEHCCCCCCCCCCHHHHHHHHC PGDVIYADPLFKEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVLAMVGGFSFDQSQFNRA CCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHH TQAYRQPGSSFKPIVYSSALDNGYTPSTQVVDAPIEIDQGQGGQVWRPDNFSNGKYLGPT HHHHHCCCCCCCCEEEEHHCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCEECHH TLRNALRLSLNTVTVRLAQDVGMPLISEYARRFGVYDELPNYLSYALGAGETTAMRMVTA HHHHHHHHHHHHEEEEEHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH YSMIANGGRRVKPTLIDRIQDRYGHTIFKHDARECRGCDAPDGWKNQSEPQLVDRREQVL HHHHHCCCCEECHHHHHHHHHHHCCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH DTMTAYQITSMLEGVVQAGTATVLKEVGKPIAGKTGTTNEAKDAWFVGFSPDLAVAIYMG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEC YDKPRPLGKGNAATGGHLAAPIAKDFMKLALADKPATPFKIPAGIKLVRVDAKTGMRAGP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCCCCCCC GDSGRTIMEAFKPGTAPPDNYSVIGVADADGRMMPPQNGGQPDSGNFIIRPGTGSLY CCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCC >Mature Secondary Structure PMRFLVRFLGFLFAAGTVVFLVGVAAAAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAAD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHEEEECCC GSLVGEYARERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDFTGMARAAVVYAQNFGS CHHHHHHHHCCEEECCHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHCCC NRRPQGASTITQQVAKNFLLTNEVSFARKIKEALLAMRIERTYSKDKILELYLNEIYLGS CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECC GAYGIAAASLVYFDKSVNELTVAEASYLAALPKMPGSLHPIRNRDRAIERRNYVVDRLLE CCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH NGWIKQADAEKARKDPLTIASRNTGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRT CCCCCCCCHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHCCCCEEEE TLDPKIQVMARKAMVAGLVRYDQEQGYRGPVSKLDTSGDWGLKLAEIKSLSDISPWRMAV ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEHHHHHCCCCCCCEEEEE VLETSDQSARIGFQPPRELGGAVSKERQTGLITLDGVKWARAATGNGRGKVPTSVAQVLQ EEEECCCCCCCCCCCCHHHCCCHHHHCCCCEEEECCCCEEHCCCCCCCCCCHHHHHHHHC PGDVIYADPLFKEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVLAMVGGFSFDQSQFNRA CCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHH TQAYRQPGSSFKPIVYSSALDNGYTPSTQVVDAPIEIDQGQGGQVWRPDNFSNGKYLGPT HHHHHCCCCCCCCEEEEHHCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCEECHH TLRNALRLSLNTVTVRLAQDVGMPLISEYARRFGVYDELPNYLSYALGAGETTAMRMVTA HHHHHHHHHHHHEEEEEHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH YSMIANGGRRVKPTLIDRIQDRYGHTIFKHDARECRGCDAPDGWKNQSEPQLVDRREQVL HHHHHCCCCEECHHHHHHHHHHHCCHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH DTMTAYQITSMLEGVVQAGTATVLKEVGKPIAGKTGTTNEAKDAWFVGFSPDLAVAIYMG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEC YDKPRPLGKGNAATGGHLAAPIAKDFMKLALADKPATPFKIPAGIKLVRVDAKTGMRAGP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEECCCCCCCCC GDSGRTIMEAFKPGTAPPDNYSVIGVADADGRMMPPQNGGQPDSGNFIIRPGTGSLY CCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA