The gene/protein map for NC_009445 is currently unavailable.
Definition Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession NC_009445
Length 7,456,587

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The map label for this gene is ygfF [H]

Identifier: 146337554

GI number: 146337554

Start: 417454

End: 418200

Strand: Direct

Name: ygfF [H]

Synonym: BRADO0408

Alternate gene names: 146337554

Gene position: 417454-418200 (Clockwise)

Preceding gene: 146337553

Following gene: 146337555

Centisome position: 5.6

GC content: 66.27

Gene sequence:

>747_bases
ATGACCGACAGGGTTGCAGTGATCACCGGCGGCAGCCGCGGCATCGGCCGCGCCACCGCAATCGCCGCTGTATCGCGCGG
CTTCAAGATCGTGGTCGGCTACGCCTCCAATGAGGCCGCCGCGCAGAGCACCGTCGCCGCCATCGAGGCCAAGAACGGCA
AGGCGATCGCGGTGAAATGCGACGTCGGCCGCGAGCACGACATCCTCGCGCTGTTCAAGGCGGCCGACAAGTTCGGCACC
CTCGGTGCCCTCATCAACAATGCCGGCATCGTCGGCCCGACCACACGCGTCGACGAGATGAGCGCCGAGCGCATCGAGCG
CTTGATGGCGGTCAATGTCACCGGCAGCATTCTCTGCGCAAGAGAGGCCGTGAAGCGGATGTCGACGCGGCATGGCGGGC
AGGGCGGGGTGATCATCAATCTGTCGTCGGTCGCTGCCAAGCTCGGCTCACCCAATACCTATGTCGACTATGCCGCCTCG
AAGGGCGCGATCGATTCCTTCACCGTCGGCCTCGGCCACGAGGTCGCCAATGAGGGCATCCGCGTCGCCGCCATCCGGCC
GGGCCTGATCGATACCGACATCCACGCCTCGGGCGGCGAACCCGATCGCGCCCATCGGCTTGCTCCCATGGTGCCGATGA
AGCGCGTCGGCACCGCGGAGGAAATCGCCAATGCCATCGTCTGGCTGCTCTCGGACGAGGCCTCCTATGTCACTTCGGCC
ATTCTCGACGTGTCGGGCGGACGCTGA

Upstream 100 bases:

>100_bases
AAGATCCGGCGCGGCTCGTCCTGGATCTCTGAGCCGAACGACGCCTTGACGACACGAGGCGCGCTTCCCAAGAGCGCGCC
TCAGACCTAACGGGGCCATC

Downstream 100 bases:

>100_bases
CGACCGTCATCATCTCTGACTACAAAGCTTACGGAACATTCGATCATGGCTACTTACGATCTCGTCGTCATCGGCACCGG
ACCCGGTGGTTATGTCTGCG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTDRVAVITGGSRGIGRATAIAAVSRGFKIVVGYASNEAAAQSTVAAIEAKNGKAIAVKCDVGREHDILALFKAADKFGT
LGALINNAGIVGPTTRVDEMSAERIERLMAVNVTGSILCAREAVKRMSTRHGGQGGVIINLSSVAAKLGSPNTYVDYAAS
KGAIDSFTVGLGHEVANEGIRVAAIRPGLIDTDIHASGGEPDRAHRLAPMVPMKRVGTAEEIANAIVWLLSDEASYVTSA
ILDVSGGR

Sequences:

>Translated_248_residues
MTDRVAVITGGSRGIGRATAIAAVSRGFKIVVGYASNEAAAQSTVAAIEAKNGKAIAVKCDVGREHDILALFKAADKFGT
LGALINNAGIVGPTTRVDEMSAERIERLMAVNVTGSILCAREAVKRMSTRHGGQGGVIINLSSVAAKLGSPNTYVDYAAS
KGAIDSFTVGLGHEVANEGIRVAAIRPGLIDTDIHASGGEPDRAHRLAPMVPMKRVGTAEEIANAIVWLLSDEASYVTSA
ILDVSGGR
>Mature_247_residues
TDRVAVITGGSRGIGRATAIAAVSRGFKIVVGYASNEAAAQSTVAAIEAKNGKAIAVKCDVGREHDILALFKAADKFGTL
GALINNAGIVGPTTRVDEMSAERIERLMAVNVTGSILCAREAVKRMSTRHGGQGGVIINLSSVAAKLGSPNTYVDYAASK
GAIDSFTVGLGHEVANEGIRVAAIRPGLIDTDIHASGGEPDRAHRLAPMVPMKRVGTAEEIANAIVWLLSDEASYVTSAI
LDVSGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=34.1463414634146, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI31542939, Length=256, Percent_Identity=30.078125, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=27.7992277992278, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=33.6099585062241, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI59889578, Length=207, Percent_Identity=32.3671497584541, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=26.5384615384615, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=27.710843373494, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=29.6747967479675, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI224922801, Length=167, Percent_Identity=33.5329341317365, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=32.4110671936759, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=28.4, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=27.3809523809524, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI226371731, Length=217, Percent_Identity=27.6497695852535, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI209862901, Length=205, Percent_Identity=28.2926829268293, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI19923983, Length=205, Percent_Identity=28.2926829268293, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI66933014, Length=184, Percent_Identity=29.8913043478261, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40254986, Length=201, Percent_Identity=29.8507462686567, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=27.1653543307087, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI4503301, Length=217, Percent_Identity=26.7281105990783, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=53.469387755102, Blast_Score=271, Evalue=4e-74,
Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=34.6613545816733, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=33.0645161290323, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=37.6518218623482, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=33.8775510204082, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=32.9268292682927, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=31.3008130081301, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=29.8804780876494, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=30.3149606299213, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=29.1187739463602, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=27.8225806451613, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787526, Length=254, Percent_Identity=22.8346456692913, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=33.0645161290323, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=33.6065573770492, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=34.6303501945525, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=32.258064516129, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=33.2046332046332, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=31.1787072243346, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=29.9242424242424, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=29.2, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=27.9850746268657, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=30.188679245283, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=30.5970149253731, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=254, Percent_Identity=26.7716535433071, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=30.188679245283, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=239, Percent_Identity=31.3807531380753, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=27.8884462151394, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=28.8389513108614, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=25, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=27.7551020408163, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=250, Percent_Identity=26.4, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=27.7992277992278, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=28.6259541984733, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=238, Percent_Identity=25.6302521008403, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=26.8774703557312, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=25.2, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=24.6212121212121, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=247, Percent_Identity=26.7206477732794, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=28.2945736434109, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=27.2, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=253, Percent_Identity=28.8537549407115, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=33.8461538461538, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=30.4347826086957, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=32.520325203252, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=30.9803921568627, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=32.0610687022901, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=31.1023622047244, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=33.8308457711443, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641388, Length=240, Percent_Identity=32.9166666666667, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24648693, Length=235, Percent_Identity=28.936170212766, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355889, Length=235, Percent_Identity=28.936170212766, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17737361, Length=232, Percent_Identity=31.8965517241379, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281364494, Length=237, Percent_Identity=30.8016877637131, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24644337, Length=182, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24663911, Length=238, Percent_Identity=26.4705882352941, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007236, Length=239, Percent_Identity=28.8702928870293, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161076933, Length=220, Percent_Identity=25.9090909090909, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24584748, Length=220, Percent_Identity=25.9090909090909, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571387, Length=238, Percent_Identity=30.672268907563, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24648944, Length=203, Percent_Identity=31.5270935960591, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364892, Length=226, Percent_Identity=28.7610619469027, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007234, Length=240, Percent_Identity=28.3333333333333, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=24.6963562753036, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357673, Length=215, Percent_Identity=29.7674418604651, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665264, Length=229, Percent_Identity=27.5109170305677, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25593; Mature: 25461

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTDRVAVITGGSRGIGRATAIAAVSRGFKIVVGYASNEAAAQSTVAAIEAKNGKAIAVKC
CCCEEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHEEEEEECCCCEEEEEE
DVGREHDILALFKAADKFGTLGALINNAGIVGPTTRVDEMSAERIERLMAVNVTGSILCA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
REAVKRMSTRHGGQGGVIINLSSVAAKLGSPNTYVDYAASKGAIDSFTVGLGHEVANEGI
HHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCHHHHCCCE
RVAAIRPGLIDTDIHASGGEPDRAHRLAPMVPMKRVGTAEEIANAIVWLLSDEASYVTSA
EEEEECCCCEECCCCCCCCCCHHHHHCCCCCCHHHCCCHHHHHHHEEEEECCCHHHHHHH
ILDVSGGR
HEECCCCC
>Mature Secondary Structure 
TDRVAVITGGSRGIGRATAIAAVSRGFKIVVGYASNEAAAQSTVAAIEAKNGKAIAVKC
CCEEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHEEEEEECCCCEEEEEE
DVGREHDILALFKAADKFGTLGALINNAGIVGPTTRVDEMSAERIERLMAVNVTGSILCA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
REAVKRMSTRHGGQGGVIINLSSVAAKLGSPNTYVDYAASKGAIDSFTVGLGHEVANEGI
HHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCHHHHCCCE
RVAAIRPGLIDTDIHASGGEPDRAHRLAPMVPMKRVGTAEEIANAIVWLLSDEASYVTSA
EEEEECCCCEECCCCCCCCCCHHHHHCCCCCCHHHCCCHHHHHHHEEEEECCCHHHHHHH
ILDVSGGR
HEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]