Click here to switch to the map view.

The map label for this gene is hupC [H]

Identifier: 146301647

GI number: 146301647

Start: 4654777

End: 4655538

Strand: Direct

Name: hupC [H]

Synonym: Fjoh_3908

Alternate gene names: 146301647

Gene position: 4654777-4655538 (Clockwise)

Preceding gene: 146301646

Following gene: 146301648

Centisome position: 76.35

GC content: 37.27

Gene sequence:

>762_bases
ATGCCAACAAAAACTAACGATTACAAAAGAGCTTATATCTGGCAGTTACCCGTACGAATTTTTCATTGGGTAAATGCCTG
GGCTATTACAGGACTTGTCGCTACAGGATTTATTATTGGGAATCCGCCGGGAATCATTTCTACCAAAGAAGCTTCAAACC
AATTTTGGTTTGGATACATTCGGGAGATTCATTTTATGTGTGCTTACTTATTGGTTACAGTCATGATTTTGAGAGTTTAT
TTTGCTTTTAAAGGAAATAAATATGCCAACTGGCGTGTCTTTTTCCCTTTTAAAAAAGAAGGTTTTAAAAGAATGTGGCA
TGTTATTAAATATGATATTTTTCTTCAAAATGAAGAAACACACGGCTCTCCAACAGGTGCTGTAGGTCACAACAGCGTAG
CGGCAGCCTCTTATCTCGTTATGTTTTTTATGGCACTCATCATGATTGCAACAGGATTTGCCATGTATGCCCCTACTTCG
ACCTGGTTTTTTCCTAAAATGTTCGGCTGGGTAGTAAACGCGGCTGGAGGAGATTTAAACGTCAGAGCGATACATCATTT
TACAACATGGACTTTTATTTTGTTTGCAATAGTTCATATTTATCTGGTTTTCTTTCATGACTGGCTGGAAGGTTTAGGAG
AAACATCGGCAATGGTAAGCGGTTATAAATTTGTTCGAACCGAAAGAGTGAAAAAAGAAGATGAACTTGTTGAAACTGAA
ATAACAAATCAAAATACAGCACAGGCAGAAGATTTAAGCTAA

Upstream 100 bases:

>100_bases
CTGCATTGCCTGTGCCGTGCATTTGTACGACGAAAATGGCGATATCATTAAAGAAGTAAATGACATAACTATCTGCACCG
TTTAATTTAAACTGAACAGT

Downstream 100 bases:

>100_bases
AAAAAATATGGAAACAGCAGTCAGCATTAGAAAAATAGACGAATTCCATTCTGATGGAAATACCATTTTGGTACTCGGAA
TAGGAAATTATTTGATGGGA

Product: Ni/Fe-hydrogenase, b-type cytochrome subunit

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPTKTNDYKRAYIWQLPVRIFHWVNAWAITGLVATGFIIGNPPGIISTKEASNQFWFGYIREIHFMCAYLLVTVMILRVY
FAFKGNKYANWRVFFPFKKEGFKRMWHVIKYDIFLQNEETHGSPTGAVGHNSVAAASYLVMFFMALIMIATGFAMYAPTS
TWFFPKMFGWVVNAAGGDLNVRAIHHFTTWTFILFAIVHIYLVFFHDWLEGLGETSAMVSGYKFVRTERVKKEDELVETE
ITNQNTAQAEDLS

Sequences:

>Translated_253_residues
MPTKTNDYKRAYIWQLPVRIFHWVNAWAITGLVATGFIIGNPPGIISTKEASNQFWFGYIREIHFMCAYLLVTVMILRVY
FAFKGNKYANWRVFFPFKKEGFKRMWHVIKYDIFLQNEETHGSPTGAVGHNSVAAASYLVMFFMALIMIATGFAMYAPTS
TWFFPKMFGWVVNAAGGDLNVRAIHHFTTWTFILFAIVHIYLVFFHDWLEGLGETSAMVSGYKFVRTERVKKEDELVETE
ITNQNTAQAEDLS
>Mature_252_residues
PTKTNDYKRAYIWQLPVRIFHWVNAWAITGLVATGFIIGNPPGIISTKEASNQFWFGYIREIHFMCAYLLVTVMILRVYF
AFKGNKYANWRVFFPFKKEGFKRMWHVIKYDIFLQNEETHGSPTGAVGHNSVAAASYLVMFFMALIMIATGFAMYAPTST
WFFPKMFGWVVNAAGGDLNVRAIHHFTTWTFILFAIVHIYLVFFHDWLEGLGETSAMVSGYKFVRTERVKKEDELVETEI
TNQNTAQAEDLS

Specific function: B-type cytochrome involved in electron transfer from hydrogenase to oxygen [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=240, Percent_Identity=30, Blast_Score=124, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 29224; Mature: 29093

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTKTNDYKRAYIWQLPVRIFHWVNAWAITGLVATGFIIGNPPGIISTKEASNQFWFGYI
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEECCCCCCCHHHHHH
REIHFMCAYLLVTVMILRVYFAFKGNKYANWRVFFPFKKEGFKRMWHVIKYDIFLQNEET
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHEEEECCCC
HGSPTGAVGHNSVAAASYLVMFFMALIMIATGFAMYAPTSTWFFPKMFGWVVNAAGGDLN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCCCEE
VRAIHHFTTWTFILFAIVHIYLVFFHDWLEGLGETSAMVSGYKFVRTERVKKEDELVETE
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITNQNTAQAEDLS
CCCCCCCCCCCCC
>Mature Secondary Structure 
PTKTNDYKRAYIWQLPVRIFHWVNAWAITGLVATGFIIGNPPGIISTKEASNQFWFGYI
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEECCCCCCCHHHHHH
REIHFMCAYLLVTVMILRVYFAFKGNKYANWRVFFPFKKEGFKRMWHVIKYDIFLQNEET
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHEEEECCCC
HGSPTGAVGHNSVAAASYLVMFFMALIMIATGFAMYAPTSTWFFPKMFGWVVNAAGGDLN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCCCEE
VRAIHHFTTWTFILFAIVHIYLVFFHDWLEGLGETSAMVSGYKFVRTERVKKEDELVETE
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITNQNTAQAEDLS
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1597428 [H]