Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
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Accession | NC_009441 |
Length | 6,096,872 |
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The map label for this gene is 146301615
Identifier: 146301615
GI number: 146301615
Start: 4612623
End: 4614920
Strand: Reverse
Name: 146301615
Synonym: Fjoh_3876
Alternate gene names: NA
Gene position: 4614920-4612623 (Counterclockwise)
Preceding gene: 146301616
Following gene: 146301614
Centisome position: 75.69
GC content: 35.47
Gene sequence:
>2298_bases ATGGTAAATATCTTTGAGAAATATAATAAACTAGGATGTTTAATAGCAGTATGCATTACATTTTCAGCAGCAGCTCAAAT GAAAACATTTCCGTTACAGGAAGTGAGATTAGAAGACGGACCTTTTAAAAAGGCACAAGATGTTGATCTTAAATATATAC TTGCCCTTAATCCCGATAAGCTTCTTGCGCCTTATTTAATTGATGCTGGTCTTCCGGTAAAGTCAACTCGTTACGGTAAT TGGGAAAGTCTGGGGCTTGACGGTCATATTGCCGGACATTATTTATCGGCCTTGTCTATGATGTATGCTTCTACAGGAAA TCCTGAGCTTAAAAACAGATTAGATTATATGATTTCTGAATTAGCCAGATGTCAGGATAAAAACGGAAATGGATATGTTG GCGGGATTCCGCAGGGAAAAGTTTTTTGGGACCGCATTCATAAAGGAGATATTGACGGAAGCAGTTTTGGCTTAAACAAT ACCTGGGTTCCCATTTACAATATCCATAAACTTTTTGCAGGATTAAACGATGCTTATCAATATACAGGAAACCAGCAGGC AAAAGAAGTTTTAATAAAATTGGGAGACTGGTTTATTGAAATGATAAAACCGCTGAGTGACGATCAGATCCAGAAAATTC TAAAAACAGAACACGGAGGCATCAACGAGTCTTTTGCAGATTTATATCTTATTACGAAGGATAAAAAATATCTGGAAACA GCTCAAAAAATTTCCCAAAAGAGTTTTTTAGAATCTTTAATAAAGAAAGAAGATAAACTTACCGGGCTTCATGCCAATAC TCAAATTCCTAAAGTTATTGGTTTTGAAAAAATTGCTTCTATTTCAGCAGATAAAGAATGGTCAGAAGCAGTTACTTTTT TTTGGGATAATGTAACTCAAAAACGAAGCGTGGCTTTTGGCGGTAACAGTGTTTCAGAACATTTTAATCCTGTCAATGAT TTCAGCGGCATGCTTAAGTCAAATGAAGGACCGGAAACCTGTAATTCCTATAACATGGAACGTCTCAGCAAAGCCTTATT TCTGGAAAAACAAGAAATGAATTATCTCGATTTCTACGAACGCACACTTTACAATCATATATTGTCAAGCCAGCATCCGG AAAAAGGAGGTTTTGTTTACTTTACACCCATTAGACCCAATCATTATCGGGTTTATTCACAGCCCGAAACCAGTATGTGG TGCTGTGTAGGATCAGGATTGGAGAATCATACAAAATATGGAGAATTAATTTACAGCCATTTTGATGAGGCTGTTTTTGT CAATCTCTTTATAGCATCAACCTTAAACTGGAATGAAAAAGGAATTGTAATCGAACAGCGTACAAAATTCCCTTATGAAA ACAGCACCGAAATTGTTCTTAATCTCAAAAAAGCAAAAACTTTTGATTTAAATATCCGTCGTCCAAAATGGGCAGAAAAC TTTAGAGTATTCATCAACGATAAAGAACAGAAAACAGAATTAAAACCATCGGGTTATATCAGTCTTAAAAGAAAATGGAA ATCAAAAGATCATGTACGTATTGAATTTGAAACGAAAACCCATTTAGAGCAATTGCCTGATGGTTCTAACTGGAGCGCTT TTGTAAACGGCCCAATTGTTTTAGCTGCCAAAACTTCTAAAGAGGCATTAGACGGATTATTTGCGGATGACAGCCGTATG GGGCATGTCGCTTCGGGAAAATACATGCCAATGGATAAAGCTTATGCGCTTGTAGGCGAAAAAGCAAGTTATGTTTCCAG ACTTAAAGAACTTGGCAATATGCGTTTTGCTTTGGATTCTTTAGAATTAGAACCCTTTTTTGAACTGCATGATGCACGTT ATCAAATGTATTTCCAAACTTTTACTAAAGATGAATTTAAAGAAAAACAGGAAATACTGCGACAGCAGGAAATAAAAGAA ATGGCGCTTGAAGCGAATACCATAGATAAAATTAATTGCGGAGAACAACAGCCCGAAGTTGATCATTTGTACAGAGGAGA AAAAAGTAATTCAGGATATGACGACGGCCGATTTTGGAGAAATACCCAGTCTTATATTTCCTATCAAATGATAAACAAAG ACAAATCAGGAAAGTTCCTTGATATAAGTATTTTGGATACAATCAATGCCAATGATATTACTATAACGATCAACAACAAA CCAGCAGAAATAGTCTCTTTAGAAAATAAAAAAATCAGGCTCGATATTGCAAAACAAGACGTTATAGCAATTAAAATAAC AGCTAAAGACGGAAAAGTAAGTCCTAAGTTTTACCAATTACGAATAGTAAAAAATTAA
Upstream 100 bases:
>100_bases TCAGAAGATTTTAATAAATACCGGAGGATTAAAACCGTCTTATCTGGGTGCGCCCGAAAGTGACAGGGTTTCACAGGATT AGTTTTAATTCAATAAAATT
Downstream 100 bases:
>100_bases TCGGAAATTTTAAAAGTTCAGAAAATAAAACCATGAAAGTACTCTATAACCTATTAGCGATTTTTTTAATTCTTACCGGA TCTAATGCGCAGGATAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 765; Mature: 765
Protein sequence:
>765_residues MVNIFEKYNKLGCLIAVCITFSAAAQMKTFPLQEVRLEDGPFKKAQDVDLKYILALNPDKLLAPYLIDAGLPVKSTRYGN WESLGLDGHIAGHYLSALSMMYASTGNPELKNRLDYMISELARCQDKNGNGYVGGIPQGKVFWDRIHKGDIDGSSFGLNN TWVPIYNIHKLFAGLNDAYQYTGNQQAKEVLIKLGDWFIEMIKPLSDDQIQKILKTEHGGINESFADLYLITKDKKYLET AQKISQKSFLESLIKKEDKLTGLHANTQIPKVIGFEKIASISADKEWSEAVTFFWDNVTQKRSVAFGGNSVSEHFNPVND FSGMLKSNEGPETCNSYNMERLSKALFLEKQEMNYLDFYERTLYNHILSSQHPEKGGFVYFTPIRPNHYRVYSQPETSMW CCVGSGLENHTKYGELIYSHFDEAVFVNLFIASTLNWNEKGIVIEQRTKFPYENSTEIVLNLKKAKTFDLNIRRPKWAEN FRVFINDKEQKTELKPSGYISLKRKWKSKDHVRIEFETKTHLEQLPDGSNWSAFVNGPIVLAAKTSKEALDGLFADDSRM GHVASGKYMPMDKAYALVGEKASYVSRLKELGNMRFALDSLELEPFFELHDARYQMYFQTFTKDEFKEKQEILRQQEIKE MALEANTIDKINCGEQQPEVDHLYRGEKSNSGYDDGRFWRNTQSYISYQMINKDKSGKFLDISILDTINANDITITINNK PAEIVSLENKKIRLDIAKQDVIAIKITAKDGKVSPKFYQLRIVKN
Sequences:
>Translated_765_residues MVNIFEKYNKLGCLIAVCITFSAAAQMKTFPLQEVRLEDGPFKKAQDVDLKYILALNPDKLLAPYLIDAGLPVKSTRYGN WESLGLDGHIAGHYLSALSMMYASTGNPELKNRLDYMISELARCQDKNGNGYVGGIPQGKVFWDRIHKGDIDGSSFGLNN TWVPIYNIHKLFAGLNDAYQYTGNQQAKEVLIKLGDWFIEMIKPLSDDQIQKILKTEHGGINESFADLYLITKDKKYLET AQKISQKSFLESLIKKEDKLTGLHANTQIPKVIGFEKIASISADKEWSEAVTFFWDNVTQKRSVAFGGNSVSEHFNPVND FSGMLKSNEGPETCNSYNMERLSKALFLEKQEMNYLDFYERTLYNHILSSQHPEKGGFVYFTPIRPNHYRVYSQPETSMW CCVGSGLENHTKYGELIYSHFDEAVFVNLFIASTLNWNEKGIVIEQRTKFPYENSTEIVLNLKKAKTFDLNIRRPKWAEN FRVFINDKEQKTELKPSGYISLKRKWKSKDHVRIEFETKTHLEQLPDGSNWSAFVNGPIVLAAKTSKEALDGLFADDSRM GHVASGKYMPMDKAYALVGEKASYVSRLKELGNMRFALDSLELEPFFELHDARYQMYFQTFTKDEFKEKQEILRQQEIKE MALEANTIDKINCGEQQPEVDHLYRGEKSNSGYDDGRFWRNTQSYISYQMINKDKSGKFLDISILDTINANDITITINNK PAEIVSLENKKIRLDIAKQDVIAIKITAKDGKVSPKFYQLRIVKN >Mature_765_residues MVNIFEKYNKLGCLIAVCITFSAAAQMKTFPLQEVRLEDGPFKKAQDVDLKYILALNPDKLLAPYLIDAGLPVKSTRYGN WESLGLDGHIAGHYLSALSMMYASTGNPELKNRLDYMISELARCQDKNGNGYVGGIPQGKVFWDRIHKGDIDGSSFGLNN TWVPIYNIHKLFAGLNDAYQYTGNQQAKEVLIKLGDWFIEMIKPLSDDQIQKILKTEHGGINESFADLYLITKDKKYLET AQKISQKSFLESLIKKEDKLTGLHANTQIPKVIGFEKIASISADKEWSEAVTFFWDNVTQKRSVAFGGNSVSEHFNPVND FSGMLKSNEGPETCNSYNMERLSKALFLEKQEMNYLDFYERTLYNHILSSQHPEKGGFVYFTPIRPNHYRVYSQPETSMW CCVGSGLENHTKYGELIYSHFDEAVFVNLFIASTLNWNEKGIVIEQRTKFPYENSTEIVLNLKKAKTFDLNIRRPKWAEN FRVFINDKEQKTELKPSGYISLKRKWKSKDHVRIEFETKTHLEQLPDGSNWSAFVNGPIVLAAKTSKEALDGLFADDSRM GHVASGKYMPMDKAYALVGEKASYVSRLKELGNMRFALDSLELEPFFELHDARYQMYFQTFTKDEFKEKQEILRQQEIKE MALEANTIDKINCGEQQPEVDHLYRGEKSNSGYDDGRFWRNTQSYISYQMINKDKSGKFLDISILDTINANDITITINNK PAEIVSLENKKIRLDIAKQDVIAIKITAKDGKVSPKFYQLRIVKN
Specific function: Unknown
COG id: COG3533
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87658; Mature: 87658
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNIFEKYNKLGCLIAVCITFSAAAQMKTFPLQEVRLEDGPFKKAQDVDLKYILALNPDK CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCEEEEEEECCCH LLAPYLIDAGLPVKSTRYGNWESLGLDGHIAGHYLSALSMMYASTGNPELKNRLDYMISE HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LARCQDKNGNGYVGGIPQGKVFWDRIHKGDIDGSSFGLNNTWVPIYNIHKLFAGLNDAYQ HHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHCCCHHHH YTGNQQAKEVLIKLGDWFIEMIKPLSDDQIQKILKTEHGGINESFADLYLITKDKKYLET CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHH AQKISQKSFLESLIKKEDKLTGLHANTQIPKVIGFEKIASISADKEWSEAVTFFWDNVTQ HHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHCHHHHHHCCCCCCHHHHHHHHHCCCCC KRSVAFGGNSVSEHFNPVNDFSGMLKSNEGPETCNSYNMERLSKALFLEKQEMNYLDFYE CCEEEECCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH RTLYNHILSSQHPEKGGFVYFTPIRPNHYRVYSQPETSMWCCVGSGLENHTKYGELIYSH HHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHH FDEAVFVNLFIASTLNWNEKGIVIEQRTKFPYENSTEIVLNLKKAKTFDLNIRRPKWAEN CCHHHEEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCC FRVFINDKEQKTELKPSGYISLKRKWKSKDHVRIEFETKTHLEQLPDGSNWSAFVNGPIV CEEEECCCHHHCCCCCCCEEEEEECCCCCCCEEEEEECHHHHHHCCCCCCCEEEECCCEE LAAKTSKEALDGLFADDSRMGHVASGKYMPMDKAYALVGEKASYVSRLKELGNMRFALDS EEECCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEEEC LELEPFFELHDARYQMYFQTFTKDEFKEKQEILRQQEIKEMALEANTIDKINCGEQQPEV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH DHLYRGEKSNSGYDDGRFWRNTQSYISYQMINKDKSGKFLDISILDTINANDITITINNK HHHHCCCCCCCCCCCCHHHCCHHHHEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCC PAEIVSLENKKIRLDIAKQDVIAIKITAKDGKVSPKFYQLRIVKN CCEEEEECCCEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEECC >Mature Secondary Structure MVNIFEKYNKLGCLIAVCITFSAAAQMKTFPLQEVRLEDGPFKKAQDVDLKYILALNPDK CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCEEEEEEECCCH LLAPYLIDAGLPVKSTRYGNWESLGLDGHIAGHYLSALSMMYASTGNPELKNRLDYMISE HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LARCQDKNGNGYVGGIPQGKVFWDRIHKGDIDGSSFGLNNTWVPIYNIHKLFAGLNDAYQ HHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHCCCHHHH YTGNQQAKEVLIKLGDWFIEMIKPLSDDQIQKILKTEHGGINESFADLYLITKDKKYLET CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHH AQKISQKSFLESLIKKEDKLTGLHANTQIPKVIGFEKIASISADKEWSEAVTFFWDNVTQ HHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHCHHHHHHCCCCCCHHHHHHHHHCCCCC KRSVAFGGNSVSEHFNPVNDFSGMLKSNEGPETCNSYNMERLSKALFLEKQEMNYLDFYE CCEEEECCCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH RTLYNHILSSQHPEKGGFVYFTPIRPNHYRVYSQPETSMWCCVGSGLENHTKYGELIYSH HHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHH FDEAVFVNLFIASTLNWNEKGIVIEQRTKFPYENSTEIVLNLKKAKTFDLNIRRPKWAEN CCHHHEEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCC FRVFINDKEQKTELKPSGYISLKRKWKSKDHVRIEFETKTHLEQLPDGSNWSAFVNGPIV CEEEECCCHHHCCCCCCCEEEEEECCCCCCCEEEEEECHHHHHHCCCCCCCEEEECCCEE LAAKTSKEALDGLFADDSRMGHVASGKYMPMDKAYALVGEKASYVSRLKELGNMRFALDS EEECCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEEEC LELEPFFELHDARYQMYFQTFTKDEFKEKQEILRQQEIKEMALEANTIDKINCGEQQPEV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH DHLYRGEKSNSGYDDGRFWRNTQSYISYQMINKDKSGKFLDISILDTINANDITITINNK HHHHCCCCCCCCCCCCHHHCCHHHHEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCC PAEIVSLENKKIRLDIAKQDVIAIKITAKDGKVSPKFYQLRIVKN CCEEEEECCCEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA