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The map label for this gene is yagH [C]

Identifier: 146301614

GI number: 146301614

Start: 4611034

End: 4612590

Strand: Reverse

Name: yagH [C]

Synonym: Fjoh_3875

Alternate gene names: 146301614

Gene position: 4612590-4611034 (Counterclockwise)

Preceding gene: 146301615

Following gene: 146301613

Centisome position: 75.66

GC content: 35.97

Gene sequence:

>1557_bases
ATGAAAGTACTCTATAACCTATTAGCGATTTTTTTAATTCTTACCGGATCTAATGCGCAGGATAAAAAAGCCCAAAACCC
TGTAATTTTTGCAGATGTTCCAGATTTATCCATTATCAGGATCGGAAGTAATTATTATATGAGCAGTACCACAATGCACA
TGAATCCGGGCGTTCCTATAATGAAATCAAAAGATTTAATTAACTGGAAAATTATAAACTATGCGTATGATACTTTAGGA
AGCAGTGATGAACTAAATCTGGATAATGGCAAAAACACTTACGGACGAGGTTCATGGGCAAGTAATATCAGATTTCATAA
CAATATGTTTTATGTAACCACTTTTTCCCAGACTACCGGAAAGACGTATGTATATACCACAAAAGATATAGAAAAAGGGC
CTTGGAAAGAAATTAGTTTTAGTCCCGCGTATCACGATCACAGTATTTTGTTTGATGACAATGACAGAGTTTACATGGTA
TATGGAAATGGTAAACTTTTTATTAAAGAACTACAATCAGATTTATCAGGAATAAAAGAAAACGGACTAGATCAGGTATT
GATTGAAAATGCCAGCAGTCCGGCAGGAAATAACATTATGCTGGGAGCAGAAGGTTCTCAATTGTACAAGATAAACGGAA
AGTATTATCTGTTTAATATTGTCTGGCCCAAAGACGGAATGCGTACAGTGCTTATTCACAGAGCCGATAAAATTGCAGGA
CCGTGGGAAGGAAAGATTGGTTTACAGGATTTAGGTGTTGCACAAGGAGGTTTAATTGACACCCCAGACGGAAAATGGTT
TTCGTACTTCTTTAGAGATTATGGAGGCGTTGGCCGTATTCCATATTTTGTGCCTGTAAACTGGGTCGACGGGTGGCCTG
TTTTGGGTGAAAATAATAAAGTGCCTCAATATCTTGATTTACCCGAAAGTAAAGGATTAATTCCGGGAATTGTGAATTCA
GATGATTTCAGCCGAAAAAAAGGAGAAAAAGATCTGTCTTTAGTCTGGCAGTGGAACCATAATCCTGATAATTCGTTATG
GTCTGTTCAGGAAAGAAAAGGATACTTACGATTAAAAACCGCTTCTATAACTAACACTTTAACTCAGGCAAAAAATACGC
TTACACAAAGAACGTTTGGACCAGAATGTTCAGGAACGACACTTTTGGAAGTTTCTCAAATGAAAGATGGTGATTTTGCC
GGACTTACTTTATTTCAAAAAGATTTTGGACTTGTTGGCGTAAAAGCAGAAAACGGATCAAAAAGAATTGTCATGATTGA
AACAGTAAACGGCATTTCAAAAGAGATTCAAAGTGTTCCTTTCTCCGGAAATAAAATCTATTTCAAAGCTTCATGCAATT
TTAAAGACAAAACAGATTTAGGACACTTTTACTACAGCCTTAACGGAAAAGAATGGATAAGCATAGGAAATGAAATAAAA
CTGCCTTACACGCTTCCTCATTTTATGGGCTACAGATTTGGTCTTTTTAATTATGCAGAGAAAAGCTTAGGAGGTTATGT
CGATTTTGATTACTTCCATCTTGAGAATAAAAATTAA

Upstream 100 bases:

>100_bases
TTAAAATAACAGCTAAAGACGGAAAAGTAAGTCCTAAGTTTTACCAATTACGAATAGTAAAAAATTAATCGGAAATTTTA
AAAGTTCAGAAAATAAAACC

Downstream 100 bases:

>100_bases
ATGATAAACGAACAGCAGCATCTTTAATTCAAAAGAAAAAACATGAAAAATAATTATCTGTATCTTTTAAGTTTACTATG
CTTTTTCAATTTAAACGCAC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MKVLYNLLAIFLILTGSNAQDKKAQNPVIFADVPDLSIIRIGSNYYMSSTTMHMNPGVPIMKSKDLINWKIINYAYDTLG
SSDELNLDNGKNTYGRGSWASNIRFHNNMFYVTTFSQTTGKTYVYTTKDIEKGPWKEISFSPAYHDHSILFDDNDRVYMV
YGNGKLFIKELQSDLSGIKENGLDQVLIENASSPAGNNIMLGAEGSQLYKINGKYYLFNIVWPKDGMRTVLIHRADKIAG
PWEGKIGLQDLGVAQGGLIDTPDGKWFSYFFRDYGGVGRIPYFVPVNWVDGWPVLGENNKVPQYLDLPESKGLIPGIVNS
DDFSRKKGEKDLSLVWQWNHNPDNSLWSVQERKGYLRLKTASITNTLTQAKNTLTQRTFGPECSGTTLLEVSQMKDGDFA
GLTLFQKDFGLVGVKAENGSKRIVMIETVNGISKEIQSVPFSGNKIYFKASCNFKDKTDLGHFYYSLNGKEWISIGNEIK
LPYTLPHFMGYRFGLFNYAEKSLGGYVDFDYFHLENKN

Sequences:

>Translated_518_residues
MKVLYNLLAIFLILTGSNAQDKKAQNPVIFADVPDLSIIRIGSNYYMSSTTMHMNPGVPIMKSKDLINWKIINYAYDTLG
SSDELNLDNGKNTYGRGSWASNIRFHNNMFYVTTFSQTTGKTYVYTTKDIEKGPWKEISFSPAYHDHSILFDDNDRVYMV
YGNGKLFIKELQSDLSGIKENGLDQVLIENASSPAGNNIMLGAEGSQLYKINGKYYLFNIVWPKDGMRTVLIHRADKIAG
PWEGKIGLQDLGVAQGGLIDTPDGKWFSYFFRDYGGVGRIPYFVPVNWVDGWPVLGENNKVPQYLDLPESKGLIPGIVNS
DDFSRKKGEKDLSLVWQWNHNPDNSLWSVQERKGYLRLKTASITNTLTQAKNTLTQRTFGPECSGTTLLEVSQMKDGDFA
GLTLFQKDFGLVGVKAENGSKRIVMIETVNGISKEIQSVPFSGNKIYFKASCNFKDKTDLGHFYYSLNGKEWISIGNEIK
LPYTLPHFMGYRFGLFNYAEKSLGGYVDFDYFHLENKN
>Mature_518_residues
MKVLYNLLAIFLILTGSNAQDKKAQNPVIFADVPDLSIIRIGSNYYMSSTTMHMNPGVPIMKSKDLINWKIINYAYDTLG
SSDELNLDNGKNTYGRGSWASNIRFHNNMFYVTTFSQTTGKTYVYTTKDIEKGPWKEISFSPAYHDHSILFDDNDRVYMV
YGNGKLFIKELQSDLSGIKENGLDQVLIENASSPAGNNIMLGAEGSQLYKINGKYYLFNIVWPKDGMRTVLIHRADKIAG
PWEGKIGLQDLGVAQGGLIDTPDGKWFSYFFRDYGGVGRIPYFVPVNWVDGWPVLGENNKVPQYLDLPESKGLIPGIVNS
DDFSRKKGEKDLSLVWQWNHNPDNSLWSVQERKGYLRLKTASITNTLTQAKNTLTQRTFGPECSGTTLLEVSQMKDGDFA
GLTLFQKDFGLVGVKAENGSKRIVMIETVNGISKEIQSVPFSGNKIYFKASCNFKDKTDLGHFYYSLNGKEWISIGNEIK
LPYTLPHFMGYRFGLFNYAEKSLGGYVDFDYFHLENKN

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=557, Percent_Identity=24.5960502692998, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 58511; Mature: 58511

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLYNLLAIFLILTGSNAQDKKAQNPVIFADVPDLSIIRIGSNYYMSSTTMHMNPGVPI
CHHHHHHHHHEEEEECCCCCCHHCCCCEEEEECCCEEEEEECCCEEEEEEEEEECCCCCE
MKSKDLINWKIINYAYDTLGSSDELNLDNGKNTYGRGSWASNIRFHNNMFYVTTFSQTTG
EECCCCEEEEEEEEEHHHCCCCCCEECCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCC
KTYVYTTKDIEKGPWKEISFSPAYHDHSILFDDNDRVYMVYGNGKLFIKELQSDLSGIKE
CEEEEECCCCCCCCCCCEECCCCCCCCEEEEECCCEEEEEECCCEEEHHHHHHHHHHHHH
NGLDQVLIENASSPAGNNIMLGAEGSQLYKINGKYYLFNIVWPKDGMRTVLIHRADKIAG
CCCCEEEEECCCCCCCCEEEEECCCCEEEEECCEEEEEEEEECCCCCEEEEEEECCCCCC
PWEGKIGLQDLGVAQGGLIDTPDGKWFSYFFRDYGGVGRIPYFVPVNWVDGWPVLGENNK
CCCCCCCHHHCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCEEECCCCC
VPQYLDLPESKGLIPGIVNSDDFSRKKGEKDLSLVWQWNHNPDNSLWSVQERKGYLRLKT
CCCEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCEEEEHHCCCEEEEEE
ASITNTLTQAKNTLTQRTFGPECSGTTLLEVSQMKDGDFAGLTLFQKDFGLVGVKAENGS
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCC
KRIVMIETVNGISKEIQSVPFSGNKIYFKASCNFKDKTDLGHFYYSLNGKEWISIGNEIK
EEEEEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEECCCEEE
LPYTLPHFMGYRFGLFNYAEKSLGGYVDFDYFHLENKN
CCEECHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
>Mature Secondary Structure
MKVLYNLLAIFLILTGSNAQDKKAQNPVIFADVPDLSIIRIGSNYYMSSTTMHMNPGVPI
CHHHHHHHHHEEEEECCCCCCHHCCCCEEEEECCCEEEEEECCCEEEEEEEEEECCCCCE
MKSKDLINWKIINYAYDTLGSSDELNLDNGKNTYGRGSWASNIRFHNNMFYVTTFSQTTG
EECCCCEEEEEEEEEHHHCCCCCCEECCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCC
KTYVYTTKDIEKGPWKEISFSPAYHDHSILFDDNDRVYMVYGNGKLFIKELQSDLSGIKE
CEEEEECCCCCCCCCCCEECCCCCCCCEEEEECCCEEEEEECCCEEEHHHHHHHHHHHHH
NGLDQVLIENASSPAGNNIMLGAEGSQLYKINGKYYLFNIVWPKDGMRTVLIHRADKIAG
CCCCEEEEECCCCCCCCEEEEECCCCEEEEECCEEEEEEEEECCCCCEEEEEEECCCCCC
PWEGKIGLQDLGVAQGGLIDTPDGKWFSYFFRDYGGVGRIPYFVPVNWVDGWPVLGENNK
CCCCCCCHHHCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCEEECCCCC
VPQYLDLPESKGLIPGIVNSDDFSRKKGEKDLSLVWQWNHNPDNSLWSVQERKGYLRLKT
CCCEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCEEEEHHCCCEEEEEE
ASITNTLTQAKNTLTQRTFGPECSGTTLLEVSQMKDGDFAGLTLFQKDFGLVGVKAENGS
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCC
KRIVMIETVNGISKEIQSVPFSGNKIYFKASCNFKDKTDLGHFYYSLNGKEWISIGNEIK
EEEEEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCEEEECCCEEE
LPYTLPHFMGYRFGLFNYAEKSLGGYVDFDYFHLENKN
CCEECHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA