Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
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Accession | NC_009441 |
Length | 6,096,872 |
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The map label for this gene is 146301616
Identifier: 146301616
GI number: 146301616
Start: 4614939
End: 4617464
Strand: Reverse
Name: 146301616
Synonym: Fjoh_3877
Alternate gene names: NA
Gene position: 4617464-4614939 (Counterclockwise)
Preceding gene: 146301617
Following gene: 146301615
Centisome position: 75.73
GC content: 36.03
Gene sequence:
>2526_bases ATGAAAAGTCTTTCAACATGGATTGCTTTATTGATTATTTGTATTTACAGCCCTTTAAAAGCGGCAGAACCTTTCATTAC CCATGAAAAAAGTTCTAACGTTATAGTGCTGAAAGAAAAATCAGTACAGCCGTCTTTTTTCATAAATACTACGCTTGATG CTGGTATCATGCGCGCCGTATACAATCTCCAATCAGATTTTGAAAAAGTTACGGGTTCAAAACCTGTTATTCTAAATCAA AACCCAGCAGATTCTTCTCCTCTTATTATAATTGGAATGGCAGGAAATTCAGTCATTGATGATTTAATAAAGCAGAAGAA AATCAACGGAAAAGATCTTAAAGGGAAAAATGAAAAATTTATTATCCAGCACGTCAAAAATCCATTTAAAGGAGTTGAAG AAGCCATTGTAATTGCCGGCAGTGACAAACGCGGGACAATTTACGGCATATATGAATTATCCAGACAAATTGGAGTTTCA CCTTGGTATTACTGGGCAGATGTTCCGGTAAAGAAAAGTGAAACACTTTATTTTATAAAAGGAACGTACAGCGATGGAGA ACCGGCTGTAAAATACAGAGGAATCTTTTTAAATGATGAAGCTCCCGCATTGAGCGGCTGGGCAAAAAAAACATTCGGCG GATTTAATAGTAAGTTCTATGAGAAAGTTTTCGAATTATTACTTCGTTTAAAGTCCAATTATATGTGGCCTGCCATGTGG GGGAATGCTTTTTATGATGATGATCCGTTAAGCGGACCTCTTGCTAATGAAATGGGAATTATAATGGGAACATCCCACCA TGAACCAATGGCTTTGGCTCAAACAGACTGGCACCGTTATATCAAAAAAAACAATCTTCCTAATGTTTGGGATTATTCTA AAAACAAAACTGTTTTAGATGAATTCTGGAAAAGCGGTATCGTACGAAGTAAAAATTGGGAAAAACTAGTAACCATAGGT ATGCGTGGAGACGGCGATGAAGCTATGAGCGAAGGAACTAATATAAGTCTGCTTGAAAATATCGTAAAAGAACAGCGCCG TATTATTTCGCAGGAAACCGGACAAAGTACAGACAAAACACCTCAGGTTTGGGCTTTATACAAAGAAGTTCAGGATTATT ACGATCAGGGAATGCGTGTTCCGGACGATGTAATTTTATTATTCTGTGATGATAACTGGGGAAATGTCCGTAAACTTCCA GATTTAAGAAAACCTCTGCACAAGGGCGGTTACGGTATGTATTATCATTTTGATTACGTTGGAGGTCCAAGAAACTCAAA ATGGATTAATATAAGTCCGATACAAAGAGTATGGGAACAAATGAATCTTAGTTATGAGCATGGTGTAGATAAAGTCTGGA TTGTAAATGTTGGTGATCTTAAACCAATGGAATTTCCTATCAGCTTTTTTCTCGATATGGCATGGAATCCTAAGAAATTT AATCCGCAGAATTTATTTGAATTTACCGAAAAATGGGCTGCAGAGCAGTTTGGAGAAAAACATTCAAAAGAAATTGCCGG ATTTTTAAATACGTATCCCAAATTCAATCGTCGTGTAACACCAGAAATGCTCGACAGTCAAACTTACAGTCTTGAAAATT ACAATGAATTTCAAAATGTAGTAAACGATTATAAAAATCTGGCACTTGATGCCTACAGAGTTTATAATGATTTACCAGAG GAATATAAAGATGCTTATTTCCAGCTCGTTTTATATCCTATAGACGCCTGCAGTAATCTCTATGAAATGTATTTTGCACA AGCGTTGAATAAAAAATTATACAAACAGAAAGATATTCAGGCTAATTATTATGCCGATTTGGTGAAGACTAAGTTCGCAC GCGATTCTGTTCTTCAAAACAAATACAATAACGAAATTGCCAATGGAAAATGGCCTCACATGATGGATCAGATGCATATT GGTTACAAAAACTGGTTTGATACTCCTAAAAATATTTTACCTGAAATACAATATATTACAGCCTCTGAAAAAACAGAACG AAAAGTATTTGTAGAAAAAGACGGTTATGTTTCTATAGAAGTCGCACATTTTTCTAAAGTAAACGATTCAAAAAGAATTC ATTGGGAAACAATTCCTGATTTTGGAAAAACAAAAAGCGGTATTACGACATTACCTCAAAACCTTTATCCGGACACAAAG GAAAATATTTTTGTAGAATATGAAATTGATTTTACTTCGACTGGAACTTTTAATGTTGAATTATTACTAGCGCCTACACT TAATTTTAACAGCAACAAAGGCCTTCGTTATGAAGTTTCTTTTGATGATGAAAAACCACAGCTTGTAAATTTTAACGGAA AATATCGCGGCGAACTCGGAAAATGGCAGGCAGAACACATGATCCATTCCCTTACGTCACACCAGATTTTAAAACCAGGC AGACATACACTGCGTTTTCGCGTACTGGATCCCGGAATAGTTCTTCAGAAGATTTTAATAAATACCGGAGGATTAAAACC GTCTTATCTGGGTGCGCCCGAAAGTGACAGGGTTTCACAGGATTAG
Upstream 100 bases:
>100_bases TCACAGTTTTTATTTAAAGAGGTTGATCCCTTAGTTTTTCAAAAATACAGCATATCTGCCTATACTATCGAGAAGTAATT TTTAATTAAGAGAAAATAAA
Downstream 100 bases:
>100_bases TTTTAATTCAATAAAATTATGGTAAATATCTTTGAGAAATATAATAAACTAGGATGTTTAATAGCAGTATGCATTACATT TTCAGCAGCAGCTCAAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 841; Mature: 841
Protein sequence:
>841_residues MKSLSTWIALLIICIYSPLKAAEPFITHEKSSNVIVLKEKSVQPSFFINTTLDAGIMRAVYNLQSDFEKVTGSKPVILNQ NPADSSPLIIIGMAGNSVIDDLIKQKKINGKDLKGKNEKFIIQHVKNPFKGVEEAIVIAGSDKRGTIYGIYELSRQIGVS PWYYWADVPVKKSETLYFIKGTYSDGEPAVKYRGIFLNDEAPALSGWAKKTFGGFNSKFYEKVFELLLRLKSNYMWPAMW GNAFYDDDPLSGPLANEMGIIMGTSHHEPMALAQTDWHRYIKKNNLPNVWDYSKNKTVLDEFWKSGIVRSKNWEKLVTIG MRGDGDEAMSEGTNISLLENIVKEQRRIISQETGQSTDKTPQVWALYKEVQDYYDQGMRVPDDVILLFCDDNWGNVRKLP DLRKPLHKGGYGMYYHFDYVGGPRNSKWINISPIQRVWEQMNLSYEHGVDKVWIVNVGDLKPMEFPISFFLDMAWNPKKF NPQNLFEFTEKWAAEQFGEKHSKEIAGFLNTYPKFNRRVTPEMLDSQTYSLENYNEFQNVVNDYKNLALDAYRVYNDLPE EYKDAYFQLVLYPIDACSNLYEMYFAQALNKKLYKQKDIQANYYADLVKTKFARDSVLQNKYNNEIANGKWPHMMDQMHI GYKNWFDTPKNILPEIQYITASEKTERKVFVEKDGYVSIEVAHFSKVNDSKRIHWETIPDFGKTKSGITTLPQNLYPDTK ENIFVEYEIDFTSTGTFNVELLLAPTLNFNSNKGLRYEVSFDDEKPQLVNFNGKYRGELGKWQAEHMIHSLTSHQILKPG RHTLRFRVLDPGIVLQKILINTGGLKPSYLGAPESDRVSQD
Sequences:
>Translated_841_residues MKSLSTWIALLIICIYSPLKAAEPFITHEKSSNVIVLKEKSVQPSFFINTTLDAGIMRAVYNLQSDFEKVTGSKPVILNQ NPADSSPLIIIGMAGNSVIDDLIKQKKINGKDLKGKNEKFIIQHVKNPFKGVEEAIVIAGSDKRGTIYGIYELSRQIGVS PWYYWADVPVKKSETLYFIKGTYSDGEPAVKYRGIFLNDEAPALSGWAKKTFGGFNSKFYEKVFELLLRLKSNYMWPAMW GNAFYDDDPLSGPLANEMGIIMGTSHHEPMALAQTDWHRYIKKNNLPNVWDYSKNKTVLDEFWKSGIVRSKNWEKLVTIG MRGDGDEAMSEGTNISLLENIVKEQRRIISQETGQSTDKTPQVWALYKEVQDYYDQGMRVPDDVILLFCDDNWGNVRKLP DLRKPLHKGGYGMYYHFDYVGGPRNSKWINISPIQRVWEQMNLSYEHGVDKVWIVNVGDLKPMEFPISFFLDMAWNPKKF NPQNLFEFTEKWAAEQFGEKHSKEIAGFLNTYPKFNRRVTPEMLDSQTYSLENYNEFQNVVNDYKNLALDAYRVYNDLPE EYKDAYFQLVLYPIDACSNLYEMYFAQALNKKLYKQKDIQANYYADLVKTKFARDSVLQNKYNNEIANGKWPHMMDQMHI GYKNWFDTPKNILPEIQYITASEKTERKVFVEKDGYVSIEVAHFSKVNDSKRIHWETIPDFGKTKSGITTLPQNLYPDTK ENIFVEYEIDFTSTGTFNVELLLAPTLNFNSNKGLRYEVSFDDEKPQLVNFNGKYRGELGKWQAEHMIHSLTSHQILKPG RHTLRFRVLDPGIVLQKILINTGGLKPSYLGAPESDRVSQD >Mature_841_residues MKSLSTWIALLIICIYSPLKAAEPFITHEKSSNVIVLKEKSVQPSFFINTTLDAGIMRAVYNLQSDFEKVTGSKPVILNQ NPADSSPLIIIGMAGNSVIDDLIKQKKINGKDLKGKNEKFIIQHVKNPFKGVEEAIVIAGSDKRGTIYGIYELSRQIGVS PWYYWADVPVKKSETLYFIKGTYSDGEPAVKYRGIFLNDEAPALSGWAKKTFGGFNSKFYEKVFELLLRLKSNYMWPAMW GNAFYDDDPLSGPLANEMGIIMGTSHHEPMALAQTDWHRYIKKNNLPNVWDYSKNKTVLDEFWKSGIVRSKNWEKLVTIG MRGDGDEAMSEGTNISLLENIVKEQRRIISQETGQSTDKTPQVWALYKEVQDYYDQGMRVPDDVILLFCDDNWGNVRKLP DLRKPLHKGGYGMYYHFDYVGGPRNSKWINISPIQRVWEQMNLSYEHGVDKVWIVNVGDLKPMEFPISFFLDMAWNPKKF NPQNLFEFTEKWAAEQFGEKHSKEIAGFLNTYPKFNRRVTPEMLDSQTYSLENYNEFQNVVNDYKNLALDAYRVYNDLPE EYKDAYFQLVLYPIDACSNLYEMYFAQALNKKLYKQKDIQANYYADLVKTKFARDSVLQNKYNNEIANGKWPHMMDQMHI GYKNWFDTPKNILPEIQYITASEKTERKVFVEKDGYVSIEVAHFSKVNDSKRIHWETIPDFGKTKSGITTLPQNLYPDTK ENIFVEYEIDFTSTGTFNVELLLAPTLNFNSNKGLRYEVSFDDEKPQLVNFNGKYRGELGKWQAEHMIHSLTSHQILKPG RHTLRFRVLDPGIVLQKILINTGGLKPSYLGAPESDRVSQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97044; Mature: 97044
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLSTWIALLIICIYSPLKAAEPFITHEKSSNVIVLKEKSVQPSFFINTTLDAGIMRAV CCCHHHHHHHHHHHHHCCHHHCCCCEEECCCCCEEEEECCCCCCCEEEECCHHHHHHHHH YNLQSDFEKVTGSKPVILNQNPADSSPLIIIGMAGNSVIDDLIKQKKINGKDLKGKNEKF HHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHH IIQHVKNPFKGVEEAIVIAGSDKRGTIYGIYELSRQIGVSPWYYWADVPVKKSETLYFIK HHHHHCCHHCCCCEEEEEECCCCCCCEEEHHHHHHHHCCCCEEEEECCCCCCCCEEEEEE GTYSDGEPAVKYRGIFLNDEAPALSGWAKKTFGGFNSKFYEKVFELLLRLKSNYMWPAMW EECCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC GNAFYDDDPLSGPLANEMGIIMGTSHHEPMALAQTDWHRYIKKNNLPNVWDYSKNKTVLD CCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHH EFWKSGIVRSKNWEKLVTIGMRGDGDEAMSEGTNISLLENIVKEQRRIISQETGQSTDKT HHHHCCCCCCCCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC PQVWALYKEVQDYYDQGMRVPDDVILLFCDDNWGNVRKLPDLRKPLHKGGYGMYYHFDYV HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEEEEC GGPRNSKWINISPIQRVWEQMNLSYEHGVDKVWIVNVGDLKPMEFPISFFLDMAWNPKKF CCCCCCCEEECCHHHHHHHHHCCCHHCCCCEEEEEECCCCCCCCCCHHHHEECCCCCCCC NPQNLFEFTEKWAAEQFGEKHSKEIAGFLNTYPKFNRRVTPEMLDSQTYSLENYNEFQNV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHH VNDYKNLALDAYRVYNDLPEEYKDAYFQLVLYPIDACSNLYEMYFAQALNKKLYKQKDIQ HHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC ANYYADLVKTKFARDSVLQNKYNNEIANGKWPHMMDQMHIGYKNWFDTPKNILPEIQYIT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHCCCCHHHCCCEEEEE ASEKTERKVFVEKDGYVSIEVAHFSKVNDSKRIHWETIPDFGKTKSGITTLPQNLYPDTK CCCCCCCEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCC ENIFVEYEIDFTSTGTFNVELLLAPTLNFNSNKGLRYEVSFDDEKPQLVNFNGKYRGELG CCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCC KWQAEHMIHSLTSHQILKPGRHTLRFRVLDPGIVLQKILINTGGLKPSYLGAPESDRVSQ HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC D C >Mature Secondary Structure MKSLSTWIALLIICIYSPLKAAEPFITHEKSSNVIVLKEKSVQPSFFINTTLDAGIMRAV CCCHHHHHHHHHHHHHCCHHHCCCCEEECCCCCEEEEECCCCCCCEEEECCHHHHHHHHH YNLQSDFEKVTGSKPVILNQNPADSSPLIIIGMAGNSVIDDLIKQKKINGKDLKGKNEKF HHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHH IIQHVKNPFKGVEEAIVIAGSDKRGTIYGIYELSRQIGVSPWYYWADVPVKKSETLYFIK HHHHHCCHHCCCCEEEEEECCCCCCCEEEHHHHHHHHCCCCEEEEECCCCCCCCEEEEEE GTYSDGEPAVKYRGIFLNDEAPALSGWAKKTFGGFNSKFYEKVFELLLRLKSNYMWPAMW EECCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC GNAFYDDDPLSGPLANEMGIIMGTSHHEPMALAQTDWHRYIKKNNLPNVWDYSKNKTVLD CCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHH EFWKSGIVRSKNWEKLVTIGMRGDGDEAMSEGTNISLLENIVKEQRRIISQETGQSTDKT HHHHCCCCCCCCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC PQVWALYKEVQDYYDQGMRVPDDVILLFCDDNWGNVRKLPDLRKPLHKGGYGMYYHFDYV HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEEEEC GGPRNSKWINISPIQRVWEQMNLSYEHGVDKVWIVNVGDLKPMEFPISFFLDMAWNPKKF CCCCCCCEEECCHHHHHHHHHCCCHHCCCCEEEEEECCCCCCCCCCHHHHEECCCCCCCC NPQNLFEFTEKWAAEQFGEKHSKEIAGFLNTYPKFNRRVTPEMLDSQTYSLENYNEFQNV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHH VNDYKNLALDAYRVYNDLPEEYKDAYFQLVLYPIDACSNLYEMYFAQALNKKLYKQKDIQ HHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC ANYYADLVKTKFARDSVLQNKYNNEIANGKWPHMMDQMHIGYKNWFDTPKNILPEIQYIT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHCCCCHHHCCCEEEEE ASEKTERKVFVEKDGYVSIEVAHFSKVNDSKRIHWETIPDFGKTKSGITTLPQNLYPDTK CCCCCCCEEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCC ENIFVEYEIDFTSTGTFNVELLLAPTLNFNSNKGLRYEVSFDDEKPQLVNFNGKYRGELG CCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCC KWQAEHMIHSLTSHQILKPGRHTLRFRVLDPGIVLQKILINTGGLKPSYLGAPESDRVSQ HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC D C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA