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The map label for this gene is ybfI [H]

Identifier: 146301583

GI number: 146301583

Start: 4558091

End: 4558864

Strand: Reverse

Name: ybfI [H]

Synonym: Fjoh_3844

Alternate gene names: 146301583

Gene position: 4558864-4558091 (Counterclockwise)

Preceding gene: 146301585

Following gene: 146301582

Centisome position: 74.77

GC content: 33.2

Gene sequence:

>774_bases
ATGACAGTTGTAAAAAATCATAATACATTTCACAAACTTCCCATTCTAGACGGTTTAGAGCTTTTGAATGCCCAAAACAA
TACGGTAAGCTTTCCTTATCATACACACGATACATTTAACATTGCATTAATTTTAAAACATACTTTTGACACTAAGCTGA
CTAATAAATATCTGCAGGCACCGGCAGGGACCTTATCAATAACAAATCCTTTTGAGGTTCATGCGACACCCTGTGATGGA
AAAACCGGCAATTCATTTTTTACCTTTTATATTGCACCGGATGTTATGAAAATGATCAACAATAACAACGACGTTTTTTT
TGATCACAAGATTATTTATGACGAACAGCTGTTTCGGGAATTTTATTTCTTGTCTCAAAATTTTGAGAGTATTGAAATTG
AAAAAGCATTGCTGGCAGTATTAGAAAGTCTTATCCGACGCTGGGGAAAAAATCAAAAATTTAAAAACTCCGAAATTAAC
TTGTTCTCAAGGTTTTTGGAAGATAAGATTAGTGAAAAATTTTCATTAGAAGCAGCAGCAAAAAGTTTTGGACTTGACAA
ATATAAGTTTTTGAGACTATTTAAATATGAGACAGGAATGACGCCAAACAGTTATGTCATTTTAAAGAGAATCGAAAAAT
CAAAAATTCTGCTCAATGATGGGATTGATTTAGCTGATGCCGCAATCGAAAGCGGATTTTACGATACAGCGCATTTTTGC
AGAAAATTTAAAGAATTCACCGGAGTAACACCTCTGCAGTATAAAATTTCTTAA

Upstream 100 bases:

>100_bases
TGTGTTGTAAACGAAGTATAAGATACTCTTTTTCTGCATGAAGTATTGAAGAGATCAATTATCATAATGGAATGTTTTTT
ATTAGTTTAATCAAATACTT

Downstream 100 bases:

>100_bases
ATTTCCTAATACTGCAATATCGTACAACAGAGTTTTGTTACAGCATTGTATTTTTGGGTATTCTAATTCTGATATGAAAT
GAAAAAAAGATTTTTCTCAA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTVVKNHNTFHKLPILDGLELLNAQNNTVSFPYHTHDTFNIALILKHTFDTKLTNKYLQAPAGTLSITNPFEVHATPCDG
KTGNSFFTFYIAPDVMKMINNNNDVFFDHKIIYDEQLFREFYFLSQNFESIEIEKALLAVLESLIRRWGKNQKFKNSEIN
LFSRFLEDKISEKFSLEAAAKSFGLDKYKFLRLFKYETGMTPNSYVILKRIEKSKILLNDGIDLADAAIESGFYDTAHFC
RKFKEFTGVTPLQYKIS

Sequences:

>Translated_257_residues
MTVVKNHNTFHKLPILDGLELLNAQNNTVSFPYHTHDTFNIALILKHTFDTKLTNKYLQAPAGTLSITNPFEVHATPCDG
KTGNSFFTFYIAPDVMKMINNNNDVFFDHKIIYDEQLFREFYFLSQNFESIEIEKALLAVLESLIRRWGKNQKFKNSEIN
LFSRFLEDKISEKFSLEAAAKSFGLDKYKFLRLFKYETGMTPNSYVILKRIEKSKILLNDGIDLADAAIESGFYDTAHFC
RKFKEFTGVTPLQYKIS
>Mature_256_residues
TVVKNHNTFHKLPILDGLELLNAQNNTVSFPYHTHDTFNIALILKHTFDTKLTNKYLQAPAGTLSITNPFEVHATPCDGK
TGNSFFTFYIAPDVMKMINNNNDVFFDHKIIYDEQLFREFYFLSQNFESIEIEKALLAVLESLIRRWGKNQKFKNSEINL
FSRFLEDKISEKFSLEAAAKSFGLDKYKFLRLFKYETGMTPNSYVILKRIEKSKILLNDGIDLADAAIESGFYDTAHFCR
KFKEFTGVTPLQYKIS

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29764; Mature: 29633

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVVKNHNTFHKLPILDGLELLNAQNNTVSFPYHTHDTFNIALILKHTFDTKLTNKYLQA
CEEECCCCCEEECCCHHHHHHHCCCCCEEECCEECCCCEEEEEEEEECCCHHHHHHHHHC
PAGTLSITNPFEVHATPCDGKTGNSFFTFYIAPDVMKMINNNNDVFFDHKIIYDEQLFRE
CCCEEEECCCCEEEEECCCCCCCCCEEEEEECHHHHHHHCCCCCEEEEEEEEHHHHHHHH
FYFLSQNFESIEIEKALLAVLESLIRRWGKNQKFKNSEINLFSRFLEDKISEKFSLEAAA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KSFGLDKYKFLRLFKYETGMTPNSYVILKRIEKSKILLNDGIDLADAAIESGFYDTAHFC
HHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHCCCCHHHHHH
RKFKEFTGVTPLQYKIS
HHHHHHHCCCCEEEEEC
>Mature Secondary Structure 
TVVKNHNTFHKLPILDGLELLNAQNNTVSFPYHTHDTFNIALILKHTFDTKLTNKYLQA
EEECCCCCEEECCCHHHHHHHCCCCCEEECCEECCCCEEEEEEEEECCCHHHHHHHHHC
PAGTLSITNPFEVHATPCDGKTGNSFFTFYIAPDVMKMINNNNDVFFDHKIIYDEQLFRE
CCCEEEECCCCEEEEECCCCCCCCCEEEEEECHHHHHHHCCCCCEEEEEEEEHHHHHHHH
FYFLSQNFESIEIEKALLAVLESLIRRWGKNQKFKNSEINLFSRFLEDKISEKFSLEAAA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KSFGLDKYKFLRLFKYETGMTPNSYVILKRIEKSKILLNDGIDLADAAIESGFYDTAHFC
HHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHCCCCHHHHHH
RKFKEFTGVTPLQYKIS
HHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]