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The map label for this gene is ytcD [H]

Identifier: 146301585

GI number: 146301585

Start: 4560157

End: 4560504

Strand: Reverse

Name: ytcD [H]

Synonym: Fjoh_3846

Alternate gene names: 146301585

Gene position: 4560504-4560157 (Counterclockwise)

Preceding gene: 146301587

Following gene: 146301583

Centisome position: 74.8

GC content: 31.03

Gene sequence:

>348_bases
ATGAGTAACGAATGTCAGATTGAACATAAAAAAGAGATAATGGCTGTCCACGATACTATGGACATATTAAATGGAAAATG
GAAAATTTCTATTATTTCATCCATCTGTTATCATAACAAAAGAAGGTTTACAGATATTTTAAATGATGTAAACGGGATAT
CCAATAAAATGTTAAGCAAAGAATTAAAGGAATTGGAAATCAATAAACTTATCAAACGTATAGTTTTAGATACTCAGCCT
GTAACTATTCATTATCAGCTCACTGAGTATGGACTGACATTAAAGACTATCATAAATGATCTTGCTGAGTGGGGGATAAA
ACATCGCAAGGTGATTATTGAAGGTTAG

Upstream 100 bases:

>100_bases
TATGTTTTAAAATTTATACAGGCAAAGTTAGTTTAGTGAAGTTTATTATTGTTACTTTGTAACTAAAAGTAACAGTAACA
TTTGAGTAACCAAGTAACCT

Downstream 100 bases:

>100_bases
TGCAAAAGCAAACAAATAAAAAACGAGTTAAGAATATTGTTTAAATATTTTTAACTCGTTTACTTGTATTTGTTTTGTGA
TATTTCTCTATTTGCCGATG

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSNECQIEHKKEIMAVHDTMDILNGKWKISIISSICYHNKRRFTDILNDVNGISNKMLSKELKELEINKLIKRIVLDTQP
VTIHYQLTEYGLTLKTIINDLAEWGIKHRKVIIEG

Sequences:

>Translated_115_residues
MSNECQIEHKKEIMAVHDTMDILNGKWKISIISSICYHNKRRFTDILNDVNGISNKMLSKELKELEINKLIKRIVLDTQP
VTIHYQLTEYGLTLKTIINDLAEWGIKHRKVIIEG
>Mature_114_residues
SNECQIEHKKEIMAVHDTMDILNGKWKISIISSICYHNKRRFTDILNDVNGISNKMLSKELKELEINKLIKRIVLDTQPV
TIHYQLTEYGLTLKTIINDLAEWGIKHRKVIIEG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13417; Mature: 13286

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNECQIEHKKEIMAVHDTMDILNGKWKISIISSICYHNKRRFTDILNDVNGISNKMLSK
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELKELEINKLIKRIVLDTQPVTIHYQLTEYGLTLKTIINDLAEWGIKHRKVIIEG
HHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCEEHHHHHHHHHHCCCHHCEEEECC
>Mature Secondary Structure 
SNECQIEHKKEIMAVHDTMDILNGKWKISIISSICYHNKRRFTDILNDVNGISNKMLSK
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELKELEINKLIKRIVLDTQPVTIHYQLTEYGLTLKTIINDLAEWGIKHRKVIIEG
HHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCEEHHHHHHHHHHCCCHHCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]