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The map label for this gene is sigZ [H]

Identifier: 146300832

GI number: 146300832

Start: 3655906

End: 3656469

Strand: Direct

Name: sigZ [H]

Synonym: Fjoh_3087

Alternate gene names: 146300832

Gene position: 3655906-3656469 (Clockwise)

Preceding gene: 146300831

Following gene: 146300833

Centisome position: 59.96

GC content: 35.82

Gene sequence:

>564_bases
ATGAGTTTGGAAATAAATACTATTCACAATCAGTTTTATATCATTTTGGGCAGGTATATTAAGGCTCATATTAATGATAC
CGACGATGCATCTGATGTTTTGCAGGAAGTTTTTATAAAGATAAACGAGAATTTAGGATCACTAACTGACGAAGGCAAAC
TAAAAAGCTGGATTTTCACGATCACAAGAAATTCCATTATTGACTATTATAGAAAAAATTCCAATAATAAAAAATCAGAG
CTGACCGATTGTATGATGCAAAAAATAATGCATGAAACAGATCTTGATACTTCGGAAGGCCTGGACTGTTGTCTGATAAA
ATTCATTGAACGGTTGCCGGAAGACTATCGGGACATTATCATGGATAGCGAAATACATGGAATTAAACAGAAAGACTTAA
CAGAAAAATACAGCCTTGCCTACCCTTCCATCCGTTCTAGAGTGCAAAGAGGCAGATCCAAATTAAAGGAAATGCTTCTG
GATTGCTGCAGTATTGAATTAGACCGCCGTGGAAATATTATGAACGTTACCTCTAAAAAATCATGCAGCGGAGGAAAATG
CTGA

Upstream 100 bases:

>100_bases
TTTCTTATGCATGCCAAAAACAGCCCATATCTGGAATAATTTCAGAGCTAAAATCAATTGTTGCTAATCCTGCTTTCTTA
ATAAACAGAACATAAAATCT

Downstream 100 bases:

>100_bases
TAACACCGAATCATTTTTGAAAACTTCATATATAGAAAATTCAGGCTGTTAAAAAAAAAAAATCAGCAAAGCCTGCATCA
TTTTTAGATTAGTGCGTCTT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSLEINTIHNQFYIILGRYIKAHINDTDDASDVLQEVFIKINENLGSLTDEGKLKSWIFTITRNSIIDYYRKNSNNKKSE
LTDCMMQKIMHETDLDTSEGLDCCLIKFIERLPEDYRDIIMDSEIHGIKQKDLTEKYSLAYPSIRSRVQRGRSKLKEMLL
DCCSIELDRRGNIMNVTSKKSCSGGKC

Sequences:

>Translated_187_residues
MSLEINTIHNQFYIILGRYIKAHINDTDDASDVLQEVFIKINENLGSLTDEGKLKSWIFTITRNSIIDYYRKNSNNKKSE
LTDCMMQKIMHETDLDTSEGLDCCLIKFIERLPEDYRDIIMDSEIHGIKQKDLTEKYSLAYPSIRSRVQRGRSKLKEMLL
DCCSIELDRRGNIMNVTSKKSCSGGKC
>Mature_186_residues
SLEINTIHNQFYIILGRYIKAHINDTDDASDVLQEVFIKINENLGSLTDEGKLKSWIFTITRNSIIDYYRKNSNNKKSEL
TDCMMQKIMHETDLDTSEGLDCCLIKFIERLPEDYRDIIMDSEIHGIKQKDLTEKYSLAYPSIRSRVQRGRSKLKEMLLD
CCSIELDRRGNIMNVTSKKSCSGGKC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21659; Mature: 21528

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEINTIHNQFYIILGRYIKAHINDTDDASDVLQEVFIKINENLGSLTDEGKLKSWIFT
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ITRNSIIDYYRKNSNNKKSELTDCMMQKIMHETDLDTSEGLDCCLIKFIERLPEDYRDII
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHH
MDSEIHGIKQKDLTEKYSLAYPSIRSRVQRGRSKLKEMLLDCCSIELDRRGNIMNVTSKK
HCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
SCSGGKC
CCCCCCC
>Mature Secondary Structure 
SLEINTIHNQFYIILGRYIKAHINDTDDASDVLQEVFIKINENLGSLTDEGKLKSWIFT
CCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ITRNSIIDYYRKNSNNKKSELTDCMMQKIMHETDLDTSEGLDCCLIKFIERLPEDYRDII
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHH
MDSEIHGIKQKDLTEKYSLAYPSIRSRVQRGRSKLKEMLLDCCSIELDRRGNIMNVTSKK
HCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
SCSGGKC
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]