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The map label for this gene is asnC [H]

Identifier: 146300555

GI number: 146300555

Start: 3337343

End: 3337822

Strand: Direct

Name: asnC [H]

Synonym: Fjoh_2805

Alternate gene names: 146300555

Gene position: 3337343-3337822 (Clockwise)

Preceding gene: 146300554

Following gene: 146300556

Centisome position: 54.74

GC content: 32.08

Gene sequence:

>480_bases
ATGAGTAAATTTCGTTTAGATGAAGTAGATCACCAGATTTTAGATATGTTAATAGACAACACGAGAGTACCGTTTACTGA
CATTGCAAAAAAACTATTGATTTCTGCTGGTACAGTACACGTTAGAGTAAAAAAGATGGAGGATGCCGGTATCATCATGG
GGTCTTCATTAGCCTTAGATTACGATAAATTAGGTTATTCATTTATTGCTTATGTTGGGGTTTTCCTTAACAATACATCA
CAAACTAAATTTGTACTAGAGCGTATCAATCAAATTCCGTTCGTAACAGTAGCTTCTGTAACGACAGGAAAATTCAATAT
CTTTTGTAAAATCAGAGCAAAAGATACTAAACACGCAAAAGAAGTTATTTTCATGATTGATGATATCGATGGTGTTTACA
GAACTGAAACTATGATTTCATTAGAGGAAAGTATTAACGATAAGAAGCGTTTGATGCATACTATTTTTAAAAATATGTAA

Upstream 100 bases:

>100_bases
TTAACGGGTTGATAAAAAGTTAATTTTTATGTGAATTTGTTATTTTTTATATATATTTTTATACTTTGTAATAGCAATTA
GTAATATTAATTAAAGAATT

Downstream 100 bases:

>100_bases
AAATTCCTCTTGAATGCTATATTATAAAATATACCTCAAGTTTTTCTTGGGGTTTTTTTATGACTAATTAACCAACCAAC
TATAACACAATTATGTACAC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSKFRLDEVDHQILDMLIDNTRVPFTDIAKKLLISAGTVHVRVKKMEDAGIIMGSSLALDYDKLGYSFIAYVGVFLNNTS
QTKFVLERINQIPFVTVASVTTGKFNIFCKIRAKDTKHAKEVIFMIDDIDGVYRTETMISLEESINDKKRLMHTIFKNM

Sequences:

>Translated_159_residues
MSKFRLDEVDHQILDMLIDNTRVPFTDIAKKLLISAGTVHVRVKKMEDAGIIMGSSLALDYDKLGYSFIAYVGVFLNNTS
QTKFVLERINQIPFVTVASVTTGKFNIFCKIRAKDTKHAKEVIFMIDDIDGVYRTETMISLEESINDKKRLMHTIFKNM
>Mature_158_residues
SKFRLDEVDHQILDMLIDNTRVPFTDIAKKLLISAGTVHVRVKKMEDAGIIMGSSLALDYDKLGYSFIAYVGVFLNNTSQ
TKFVLERINQIPFVTVASVTTGKFNIFCKIRAKDTKHAKEVIFMIDDIDGVYRTETMISLEESINDKKRLMHTIFKNM

Specific function: Activator of asnA transcription; autogenous regulator of its own transcription; and repressor of the expression of gidA at a post-transcriptional level [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=146, Percent_Identity=33.5616438356164, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18173; Mature: 18041

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFRLDEVDHQILDMLIDNTRVPFTDIAKKLLISAGTVHVRVKKMEDAGIIMGSSLALD
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCEEECCCEEEC
YDKLGYSFIAYVGVFLNNTSQTKFVLERINQIPFVTVASVTTGKFNIFCKIRAKDTKHAK
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCCCCCHH
EVIFMIDDIDGVYRTETMISLEESINDKKRLMHTIFKNM
EEEEEEECCCCCHHHHHHEEHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SKFRLDEVDHQILDMLIDNTRVPFTDIAKKLLISAGTVHVRVKKMEDAGIIMGSSLALD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCEEECCCEEEC
YDKLGYSFIAYVGVFLNNTSQTKFVLERINQIPFVTVASVTTGKFNIFCKIRAKDTKHAK
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCCCCCHH
EVIFMIDDIDGVYRTETMISLEESINDKKRLMHTIFKNM
EEEEEEECCCCCHHHHHHEEHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]