| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is ppc [H]
Identifier: 146300556
GI number: 146300556
Start: 3337915
End: 3340500
Strand: Direct
Name: ppc [H]
Synonym: Fjoh_2806
Alternate gene names: 146300556
Gene position: 3337915-3340500 (Clockwise)
Preceding gene: 146300555
Following gene: 146300557
Centisome position: 54.75
GC content: 33.29
Gene sequence:
>2586_bases ATGTACACGTTGCCAAAAATAGAACGTTTTAACAAAGACGTTCTTTCTAAATATCACATTTACAATAGTGTTTTCATAAC ATTACCATTTGATTCTATAGATAACACTGGAGTTTTACTTCCTTTATTTACAGAAACCTGCGAAACGGGATTTAAAAAAC AGGAAACACCAAAAGAAATTTTTGATTTCTTTTCGAATAAGTTCCTAAACAATGCTTCAGAAACTGAGAAAATCGATCTT ATGTTTCGATTTATTCAATATATTGAGCGTCAGATTGTATTATTTGATGCTATTGAAGATGCAGCTTTTCCTGAAGTTAA TAATATGGAAGGACGCGGCTCTTTGCGAGATATTAAAGAAAAATCAGACGCTAAAGAAAAAGACGATGAACTGGTAGATT TCTTAGAAAGCTTTAATGTCCGTACAGTTTTAACAGCACACCCAACACAATTTTATCCTGGACCGGTACTTGGAATTATA AATGATTTGACAGAAGCAATTCGTCAGAACGATTTATTGCAAATTAAACAATTGCTTGCGCAGCTGGGAAAAACACCTTT TATTCAGCATGAAAAGCCAAATCCTTACGACGAAGCGGTAAGTTTAATTTGGTACCTTGAAAATGTATTCTATGCTACGG CTGGAGAAATTGTACATTATCTTCAAAAAAATCTTCACGATGGAAACCCAATCAAGAACCAATTGATAAAACTTGGATTC TGGCCTGGAGGTGACCGCGACGGAAATCCTTTTGTTACAACAGAAATTACTCTTAAAGTTGCAGATCGTTTAAGAACTTC AATTTTAAAGTGCTACTATGTTGAAATGAGAAACTTAAAAAGAAAGCTAACTTTCTCAGGTGTAGATACTTTGGTATCTG ATCTTGAACATAAGCTTTACCGTTCTGTTTTTTATTCTAAAGGTGAAATTTTCATCACTTTAGATGAATTATTAACGCAG TTGAATACTATTCGTACTATAATTATTGAAAAACATCAATCATTATATCTAGATGAATTAGAAGCACTTTTAGTAAAAAT TAATCTATTCGGATTCCATTTTGCTACTTTAGATATTCGTCAGAACAGCAAAATTCACAATGCCGTATTTAAAGATGTTG TGAATTATTATTTGAATTCTGGTTCAGATATTTTCCCTAAGAATTATTATGATTTAACAGAAGATCAAAAAATCGATGTT TTATCAAAAGTACAAGGGAATTTAAATCCTGCCGATTTTGAAAACGAAATTACAAGATCGACTTTAGAATCTGTTCAGGC TATCAAAACGATTCAGGCAAACAATGGTGAAGAAGGCGCTAATCGTTACATTATCAGCAACAACGAAAGTGCTCTGAATG TAATGGAGACTTTTGCAATGATCCGTTTAAACAATTGGAAAAACCCAACGGTTGATATTATTCCGCTTTTTGAATCTGTT GATGATCTACAGAATGCGCACCAAATTATGGAGCAGCTGTATACTAATCCGGAATATTCTAAGCATTTAAAATCAAGAGG AAATGAGCAGACAATTATGCTTGGTTTCTCTGACGGGACAAAAGACGGCGGTTATTTAATGGCTAACTGGAGTATTTATC AGGCAAAAATTTCGTTGACTGAAATTTCAAGAAAATACGGAATCAAAGCTATTTTCTTTGACGGACGCGGCGGACCTCCT GCACGAGGCGGTGGAAAAACACATAAATTCTACGCTTCATTAGGGCCAAAAATTGAAAATAAAGAAATCCAGATAACGGT TCAGGGACAAACTATTAGTTCTAATTTTGGAACTTTAGATTCTTGCCGTTTTAATATCGAAAACTTATTAAGTGCCGGTG TTACGAATCAGGTATTTGGTAAAGAAAAGAATGAATTATCTGCAGAAGAAACTCAAATCCTGACACAATTAGCTGATTTA GGATATGAGAAGTATTTGAGCTTTAAGAATCACCCAAAATTTATTCCTTATTTGGAAAAAATGAGTACGTTGAAATATTA TTCTAAAACAAACATTGGAAGCCGTCCATCAAAAAGAAGTAAATCTGAATCATTAGATTTTGCTGATTTAAGAGCAATTC CGTTTGTGGGTTCTTGGAGTCAGTTAAAACAAAATGTACCAGGATTTTTTGGAGTAGGAACAGCTTTAAAACATTTTGAA AAATCTGGCCAGTGGCACAAAGTAAGTGATTTGTACCACAATTCATTGTTCTTTAAAACCCTGCTTGAAAACAGTATGAT GTCATTGGCTAAATCATTTTTACCATTAACAGCTTACATGAGAAAAGATCCTGAGTTTGGTGAATTCTGGCAGATTATCC ATGATGAATTCTCTGAAACAAAACGTCTTTTATTGAAAATTGCGGGTCATAAAACCTTAATGGAAAATTATCCTGATGGT ATAGCTTCAATTCAAATAAGAGAACGTATTGTACTGCCATTGTTAACGATACAACAATATGCATTATCAAAAATAAATGA ATTAAACAAAGAGAGTTCTCCAAACGAAGAGCTTATTAAAGTGTACGAGAAAATTGTAACGAGATCTCTTTTTGGAAATA CAAATGCAAGTAGAAATTCAGCTTAA
Upstream 100 bases:
>100_bases ATATGTAAAAATTCCTCTTGAATGCTATATTATAAAATATACCTCAAGTTTTTCTTGGGGTTTTTTTATGACTAATTAAC CAACCAACTATAACACAATT
Downstream 100 bases:
>100_bases ATAATAAACAGAAATGAGAACAGCAGAATTATTAGATAATGAATATTCTGGTCATTTTGGTACTTATATCAAAGAAGCCG GTGATGGAATTTTAATTGAA
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MYTLPKIERFNKDVLSKYHIYNSVFITLPFDSIDNTGVLLPLFTETCETGFKKQETPKEIFDFFSNKFLNNASETEKIDL MFRFIQYIERQIVLFDAIEDAAFPEVNNMEGRGSLRDIKEKSDAKEKDDELVDFLESFNVRTVLTAHPTQFYPGPVLGII NDLTEAIRQNDLLQIKQLLAQLGKTPFIQHEKPNPYDEAVSLIWYLENVFYATAGEIVHYLQKNLHDGNPIKNQLIKLGF WPGGDRDGNPFVTTEITLKVADRLRTSILKCYYVEMRNLKRKLTFSGVDTLVSDLEHKLYRSVFYSKGEIFITLDELLTQ LNTIRTIIIEKHQSLYLDELEALLVKINLFGFHFATLDIRQNSKIHNAVFKDVVNYYLNSGSDIFPKNYYDLTEDQKIDV LSKVQGNLNPADFENEITRSTLESVQAIKTIQANNGEEGANRYIISNNESALNVMETFAMIRLNNWKNPTVDIIPLFESV DDLQNAHQIMEQLYTNPEYSKHLKSRGNEQTIMLGFSDGTKDGGYLMANWSIYQAKISLTEISRKYGIKAIFFDGRGGPP ARGGGKTHKFYASLGPKIENKEIQITVQGQTISSNFGTLDSCRFNIENLLSAGVTNQVFGKEKNELSAEETQILTQLADL GYEKYLSFKNHPKFIPYLEKMSTLKYYSKTNIGSRPSKRSKSESLDFADLRAIPFVGSWSQLKQNVPGFFGVGTALKHFE KSGQWHKVSDLYHNSLFFKTLLENSMMSLAKSFLPLTAYMRKDPEFGEFWQIIHDEFSETKRLLLKIAGHKTLMENYPDG IASIQIRERIVLPLLTIQQYALSKINELNKESSPNEELIKVYEKIVTRSLFGNTNASRNSA
Sequences:
>Translated_861_residues MYTLPKIERFNKDVLSKYHIYNSVFITLPFDSIDNTGVLLPLFTETCETGFKKQETPKEIFDFFSNKFLNNASETEKIDL MFRFIQYIERQIVLFDAIEDAAFPEVNNMEGRGSLRDIKEKSDAKEKDDELVDFLESFNVRTVLTAHPTQFYPGPVLGII NDLTEAIRQNDLLQIKQLLAQLGKTPFIQHEKPNPYDEAVSLIWYLENVFYATAGEIVHYLQKNLHDGNPIKNQLIKLGF WPGGDRDGNPFVTTEITLKVADRLRTSILKCYYVEMRNLKRKLTFSGVDTLVSDLEHKLYRSVFYSKGEIFITLDELLTQ LNTIRTIIIEKHQSLYLDELEALLVKINLFGFHFATLDIRQNSKIHNAVFKDVVNYYLNSGSDIFPKNYYDLTEDQKIDV LSKVQGNLNPADFENEITRSTLESVQAIKTIQANNGEEGANRYIISNNESALNVMETFAMIRLNNWKNPTVDIIPLFESV DDLQNAHQIMEQLYTNPEYSKHLKSRGNEQTIMLGFSDGTKDGGYLMANWSIYQAKISLTEISRKYGIKAIFFDGRGGPP ARGGGKTHKFYASLGPKIENKEIQITVQGQTISSNFGTLDSCRFNIENLLSAGVTNQVFGKEKNELSAEETQILTQLADL GYEKYLSFKNHPKFIPYLEKMSTLKYYSKTNIGSRPSKRSKSESLDFADLRAIPFVGSWSQLKQNVPGFFGVGTALKHFE KSGQWHKVSDLYHNSLFFKTLLENSMMSLAKSFLPLTAYMRKDPEFGEFWQIIHDEFSETKRLLLKIAGHKTLMENYPDG IASIQIRERIVLPLLTIQQYALSKINELNKESSPNEELIKVYEKIVTRSLFGNTNASRNSA >Mature_861_residues MYTLPKIERFNKDVLSKYHIYNSVFITLPFDSIDNTGVLLPLFTETCETGFKKQETPKEIFDFFSNKFLNNASETEKIDL MFRFIQYIERQIVLFDAIEDAAFPEVNNMEGRGSLRDIKEKSDAKEKDDELVDFLESFNVRTVLTAHPTQFYPGPVLGII NDLTEAIRQNDLLQIKQLLAQLGKTPFIQHEKPNPYDEAVSLIWYLENVFYATAGEIVHYLQKNLHDGNPIKNQLIKLGF WPGGDRDGNPFVTTEITLKVADRLRTSILKCYYVEMRNLKRKLTFSGVDTLVSDLEHKLYRSVFYSKGEIFITLDELLTQ LNTIRTIIIEKHQSLYLDELEALLVKINLFGFHFATLDIRQNSKIHNAVFKDVVNYYLNSGSDIFPKNYYDLTEDQKIDV LSKVQGNLNPADFENEITRSTLESVQAIKTIQANNGEEGANRYIISNNESALNVMETFAMIRLNNWKNPTVDIIPLFESV DDLQNAHQIMEQLYTNPEYSKHLKSRGNEQTIMLGFSDGTKDGGYLMANWSIYQAKISLTEISRKYGIKAIFFDGRGGPP ARGGGKTHKFYASLGPKIENKEIQITVQGQTISSNFGTLDSCRFNIENLLSAGVTNQVFGKEKNELSAEETQILTQLADL GYEKYLSFKNHPKFIPYLEKMSTLKYYSKTNIGSRPSKRSKSESLDFADLRAIPFVGSWSQLKQNVPGFFGVGTALKHFE KSGQWHKVSDLYHNSLFFKTLLENSMMSLAKSFLPLTAYMRKDPEFGEFWQIIHDEFSETKRLLLKIAGHKTLMENYPDG IASIQIRERIVLPLLTIQQYALSKINELNKESSPNEELIKVYEKIVTRSLFGNTNASRNSA
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=819, Percent_Identity=25.7631257631258, Blast_Score=197, Evalue=2e-51,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 98603; Mature: 98603
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYTLPKIERFNKDVLSKYHIYNSVFITLPFDSIDNTGVLLPLFTETCETGFKKQETPKEI CCCCCHHHHHCHHHHHHHHHEEEEEEEEECCCCCCCCEEEHHHHHHHHCCCCCCCCHHHH FDFFSNKFLNNASETEKIDLMFRFIQYIERQIVLFDAIEDAAFPEVNNMEGRGSLRDIKE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCCCCCCCCCCCHHHHHH KSDAKEKDDELVDFLESFNVRTVLTAHPTQFYPGPVLGIINDLTEAIRQNDLLQIKQLLA HHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH QLGKTPFIQHEKPNPYDEAVSLIWYLENVFYATAGEIVHYLQKNLHDGNPIKNQLIKLGF HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEC WPGGDRDGNPFVTTEITLKVADRLRTSILKCYYVEMRNLKRKLTFSGVDTLVSDLEHKLY CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSVFYSKGEIFITLDELLTQLNTIRTIIIEKHQSLYLDELEALLVKINLFGFHFATLDIR HHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC QNSKIHNAVFKDVVNYYLNSGSDIFPKNYYDLTEDQKIDVLSKVQGNLNPADFENEITRS CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH TLESVQAIKTIQANNGEEGANRYIISNNESALNVMETFAMIRLNNWKNPTVDIIPLFESV HHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHH DDLQNAHQIMEQLYTNPEYSKHLKSRGNEQTIMLGFSDGTKDGGYLMANWSIYQAKISLT HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECEEEEEEEHHH EISRKYGIKAIFFDGRGGPPARGGGKTHKFYASLGPKIENKEIQITVQGQTISSNFGTLD HHHHHHCCEEEEECCCCCCCCCCCCCCEEEHHHCCCCCCCCEEEEEEECCEECCCCCCHH SCRFNIENLLSAGVTNQVFGKEKNELSAEETQILTQLADLGYEKYLSFKNHPKFIPYLEK HHHCCHHHHHHCCCCHHHHCCCCHHCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHH MSTLKYYSKTNIGSRPSKRSKSESLDFADLRAIPFVGSWSQLKQNVPGFFGVGTALKHFE HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHH KSGQWHKVSDLYHNSLFFKTLLENSMMSLAKSFLPLTAYMRKDPEFGEFWQIIHDEFSET HCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH KRLLLKIAGHKTLMENYPDGIASIQIRERIVLPLLTIQQYALSKINELNKESSPNEELIK HHHHHHHHCCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH VYEKIVTRSLFGNTNASRNSA HHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MYTLPKIERFNKDVLSKYHIYNSVFITLPFDSIDNTGVLLPLFTETCETGFKKQETPKEI CCCCCHHHHHCHHHHHHHHHEEEEEEEEECCCCCCCCEEEHHHHHHHHCCCCCCCCHHHH FDFFSNKFLNNASETEKIDLMFRFIQYIERQIVLFDAIEDAAFPEVNNMEGRGSLRDIKE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCCCCCCCCCCCHHHHHH KSDAKEKDDELVDFLESFNVRTVLTAHPTQFYPGPVLGIINDLTEAIRQNDLLQIKQLLA HHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH QLGKTPFIQHEKPNPYDEAVSLIWYLENVFYATAGEIVHYLQKNLHDGNPIKNQLIKLGF HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEC WPGGDRDGNPFVTTEITLKVADRLRTSILKCYYVEMRNLKRKLTFSGVDTLVSDLEHKLY CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSVFYSKGEIFITLDELLTQLNTIRTIIIEKHQSLYLDELEALLVKINLFGFHFATLDIR HHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC QNSKIHNAVFKDVVNYYLNSGSDIFPKNYYDLTEDQKIDVLSKVQGNLNPADFENEITRS CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH TLESVQAIKTIQANNGEEGANRYIISNNESALNVMETFAMIRLNNWKNPTVDIIPLFESV HHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHH DDLQNAHQIMEQLYTNPEYSKHLKSRGNEQTIMLGFSDGTKDGGYLMANWSIYQAKISLT HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECEEEEEEEHHH EISRKYGIKAIFFDGRGGPPARGGGKTHKFYASLGPKIENKEIQITVQGQTISSNFGTLD HHHHHHCCEEEEECCCCCCCCCCCCCCEEEHHHCCCCCCCCEEEEEEECCEECCCCCCHH SCRFNIENLLSAGVTNQVFGKEKNELSAEETQILTQLADLGYEKYLSFKNHPKFIPYLEK HHHCCHHHHHHCCCCHHHHCCCCHHCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHH MSTLKYYSKTNIGSRPSKRSKSESLDFADLRAIPFVGSWSQLKQNVPGFFGVGTALKHFE HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHH KSGQWHKVSDLYHNSLFFKTLLENSMMSLAKSFLPLTAYMRKDPEFGEFWQIIHDEFSET HCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH KRLLLKIAGHKTLMENYPDGIASIQIRERIVLPLLTIQQYALSKINELNKESSPNEELIK HHHHHHHHCCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH VYEKIVTRSLFGNTNASRNSA HHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA