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The map label for this gene is ygdL [H]

Identifier: 146300526

GI number: 146300526

Start: 3309218

End: 3309931

Strand: Direct

Name: ygdL [H]

Synonym: Fjoh_2776

Alternate gene names: 146300526

Gene position: 3309218-3309931 (Clockwise)

Preceding gene: 146300525

Following gene: 146300527

Centisome position: 54.28

GC content: 34.73

Gene sequence:

>714_bases
ATGGCAGAGTGGACAGAAAGAGCCGAGCTTTTATTTACAAAAGAAGGATTAGAAAATTTGCGTAATGCAAATGTATTAGT
AGTAGGTTTAGGCGGTGTTGGATCGTTTGCAGCTGAGTTTTTGGCAAGAGCCGGAGTAGGGAACATGACAATAGTAGATG
GTGATGTTGTTGATATTACCAACATTAACAGACAATTGCCTGCTTTGCATTCTACAGTTGGCGAACCAAAAATTAAAATT
GTCGGTGATCGTCTAAGGGATATTAATCCGGAACTAAAACTAACCCGCGTTCAGGAATTTTTATCGCCGGAAAGAGCTTT
TGAAATCGTTTCTCCAGAATTTGATTATGTATTAGATTGTATTGACAGTATTACACCAAAATTGAATTTAATTATTGCTG
CAAAACGCAAAAGAGTTAAAATTATCAGCAGCATGGGAGCAGGAGGGAAAATGCTGGCTTCTAAAGTAAAAGTGGCTGAT
ATTTCGAAAACTATAAACTGTTATTTTTCTAAAACAATTCGTAAACGTTTAAAAGCAGTAAATATCAATAAATTAAAAGT
TGTTTTTTCATCAGAAATTCAAAACGAGAAGAGTTTAAAATTAACTGACGGGAAAAACTTCAAAAAATCGTTCTACGGAA
CAAACAGCTATATGCCGGGATTATTTGGACTTCATGCAGCTGAAACGGTAATTCGTTATTTGATCAATAAATAA

Upstream 100 bases:

>100_bases
TTATTTCAAGTAATTGTAAAATTGTATTTGAAAGTAAAATGTGAAAGGTTTTTGATCTGAAACTTGAAACAAATAAAAAT
AAAACAACAAAAAATATAAT

Downstream 100 bases:

>100_bases
GAGATTAAGGTACTAAGATTCTCAGCTGCTAAGGCTTTTGAATTTTAGTATCTTAAAAAATAAAAACTTTATAAGAGTTT
AATCTCAAGCAATAAACCTT

Product: UBA/THIF-type NAD/FAD binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MAEWTERAELLFTKEGLENLRNANVLVVGLGGVGSFAAEFLARAGVGNMTIVDGDVVDITNINRQLPALHSTVGEPKIKI
VGDRLRDINPELKLTRVQEFLSPERAFEIVSPEFDYVLDCIDSITPKLNLIIAAKRKRVKIISSMGAGGKMLASKVKVAD
ISKTINCYFSKTIRKRLKAVNINKLKVVFSSEIQNEKSLKLTDGKNFKKSFYGTNSYMPGLFGLHAAETVIRYLINK

Sequences:

>Translated_237_residues
MAEWTERAELLFTKEGLENLRNANVLVVGLGGVGSFAAEFLARAGVGNMTIVDGDVVDITNINRQLPALHSTVGEPKIKI
VGDRLRDINPELKLTRVQEFLSPERAFEIVSPEFDYVLDCIDSITPKLNLIIAAKRKRVKIISSMGAGGKMLASKVKVAD
ISKTINCYFSKTIRKRLKAVNINKLKVVFSSEIQNEKSLKLTDGKNFKKSFYGTNSYMPGLFGLHAAETVIRYLINK
>Mature_236_residues
AEWTERAELLFTKEGLENLRNANVLVVGLGGVGSFAAEFLARAGVGNMTIVDGDVVDITNINRQLPALHSTVGEPKIKIV
GDRLRDINPELKLTRVQEFLSPERAFEIVSPEFDYVLDCIDSITPKLNLIIAAKRKRVKIISSMGAGGKMLASKVKVADI
SKTINCYFSKTIRKRLKAVNINKLKVVFSSEIQNEKSLKLTDGKNFKKSFYGTNSYMPGLFGLHAAETVIRYLINK

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Homo sapiens, GI7657339, Length=110, Percent_Identity=35.4545454545455, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1789177, Length=179, Percent_Identity=39.1061452513966, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1787048, Length=152, Percent_Identity=34.8684210526316, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI87082356, Length=140, Percent_Identity=33.5714285714286, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17540406, Length=116, Percent_Identity=31.8965517241379, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321790, Length=235, Percent_Identity=26.3829787234043, Blast_Score=96, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6322825, Length=218, Percent_Identity=27.9816513761468, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6321903, Length=154, Percent_Identity=31.8181818181818, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24582879, Length=115, Percent_Identity=38.2608695652174, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 26277; Mature: 26146

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEWTERAELLFTKEGLENLRNANVLVVGLGGVGSFAAEFLARAGVGNMTIVDGDVVDIT
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCEEEEC
NINRQLPALHSTVGEPKIKIVGDRLRDINPELKLTRVQEFLSPERAFEIVSPEFDYVLDC
CCCHHCCHHHHHCCCCEEEEECCHHHCCCCCHHHHHHHHHHCHHHHHEECCCCHHHHHHH
IDSITPKLNLIIAAKRKRVKIISSMGAGGKMLASKVKVADISKTINCYFSKTIRKRLKAV
HHHCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NINKLKVVFSSEIQNEKSLKLTDGKNFKKSFYGTNSYMPGLFGLHAAETVIRYLINK
CCCCEEEEEECCCCCCCCEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEWTERAELLFTKEGLENLRNANVLVVGLGGVGSFAAEFLARAGVGNMTIVDGDVVDIT
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCEEEEC
NINRQLPALHSTVGEPKIKIVGDRLRDINPELKLTRVQEFLSPERAFEIVSPEFDYVLDC
CCCHHCCHHHHHCCCCEEEEECCHHHCCCCCHHHHHHHHHHCHHHHHEECCCCHHHHHHH
IDSITPKLNLIIAAKRKRVKIISSMGAGGKMLASKVKVADISKTINCYFSKTIRKRLKAV
HHHCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NINKLKVVFSSEIQNEKSLKLTDGKNFKKSFYGTNSYMPGLFGLHAAETVIRYLINK
CCCCEEEEEECCCCCCCCEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]