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The map label for this gene is yjjV [C]

Identifier: 146300525

GI number: 146300525

Start: 3308508

End: 3309161

Strand: Direct

Name: yjjV [C]

Synonym: Fjoh_2775

Alternate gene names: 146300525

Gene position: 3308508-3309161 (Clockwise)

Preceding gene: 146300524

Following gene: 146300526

Centisome position: 54.27

GC content: 28.75

Gene sequence:

>654_bases
ATGGAATTCTTTAATTTTCATACACATCAATTTACAAATCAATCTAATATACTAGAATTGGTAAATCAATATCCGCAGGA
ATTTGATGAATCGATTCCGTTTTATTCAATCGGAATTCATCCGTGGTATATTAAAGAAGATCAAATTGATTTAGAACTGA
AAATTATTGAAGATAAACTGCAAGCCGAAAATTGCCTGGCTGTTGGTGAATGCGGTTTAGATAAACGAATCGAAATTCCG
TTAGAACAGCAGATTATAGTTTTTGAAAAACAATTGGCTCTAGCCGAAAAATATAAGAAACCTGTAGTAATTCATTGTGT
TGCTGCTTTTCAGGAAATTAAGGCAATTAAAAAGAAATTAAAAATTTCTGTTCCAATGATCATTCACGGTTTTTCTAAAA
ATAAACAACTTGCAGAACAATTAATTAAAGATGGATTTTATCTTTCGTTTGGGAAATATCTATTAAAGAATCCCGATTTA
AAAATCGTTTTTGAGAGTGTTCCAAACGATCGTTTCTTTTTAGAAACCGATACAATTGAAGAAGATATCCAGCAGGTTTA
TAATATAGCATCAGAATATAAAAACATAACAATAAAAGAATTACAGGATATTATTTCAAGTAATTGTAAAATTGTATTTG
AAAGTAAAATGTGA

Upstream 100 bases:

>100_bases
ATCCGTATTGCGCTTACAACCATAAATATTCTTGTCCGCTAGTTCCTCTTGAAAATGATTTGAAAGTAGAAATTAAAGCA
GGAGTAAAGACTTTTCATTA

Downstream 100 bases:

>100_bases
AAGGTTTTTGATCTGAAACTTGAAACAAATAAAAATAAAACAACAAAAAATATAATATGGCAGAGTGGACAGAAAGAGCC
GAGCTTTTATTTACAAAAGA

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MEFFNFHTHQFTNQSNILELVNQYPQEFDESIPFYSIGIHPWYIKEDQIDLELKIIEDKLQAENCLAVGECGLDKRIEIP
LEQQIIVFEKQLALAEKYKKPVVIHCVAAFQEIKAIKKKLKISVPMIIHGFSKNKQLAEQLIKDGFYLSFGKYLLKNPDL
KIVFESVPNDRFFLETDTIEEDIQQVYNIASEYKNITIKELQDIISSNCKIVFESKM

Sequences:

>Translated_217_residues
MEFFNFHTHQFTNQSNILELVNQYPQEFDESIPFYSIGIHPWYIKEDQIDLELKIIEDKLQAENCLAVGECGLDKRIEIP
LEQQIIVFEKQLALAEKYKKPVVIHCVAAFQEIKAIKKKLKISVPMIIHGFSKNKQLAEQLIKDGFYLSFGKYLLKNPDL
KIVFESVPNDRFFLETDTIEEDIQQVYNIASEYKNITIKELQDIISSNCKIVFESKM
>Mature_217_residues
MEFFNFHTHQFTNQSNILELVNQYPQEFDESIPFYSIGIHPWYIKEDQIDLELKIIEDKLQAENCLAVGECGLDKRIEIP
LEQQIIVFEKQLALAEKYKKPVVIHCVAAFQEIKAIKKKLKISVPMIIHGFSKNKQLAEQLIKDGFYLSFGKYLLKNPDL
KIVFESVPNDRFFLETDTIEEDIQQVYNIASEYKNITIKELQDIISSNCKIVFESKM

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903439, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI14042943, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559024, Length=167, Percent_Identity=29.940119760479, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17543026, Length=126, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24586117, Length=187, Percent_Identity=29.9465240641711, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI221330018, Length=187, Percent_Identity=29.9465240641711, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24648690, Length=182, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 25385; Mature: 25385

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFNFHTHQFTNQSNILELVNQYPQEFDESIPFYSIGIHPWYIKEDQIDLELKIIEDKL
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCEEEEEEHHHH
QAENCLAVGECGLDKRIEIPLEQQIIVFEKQLALAEKYKKPVVIHCVAAFQEIKAIKKKL
HHCCCEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH
KISVPMIIHGFSKNKQLAEQLIKDGFYLSFGKYLLKNPDLKIVFESVPNDRFFLETDTIE
CCCCCCEEECCCCCHHHHHHHHHCCEEEHHHHHHHCCCCEEEEEECCCCCEEEEECCHHH
EDIQQVYNIASEYKNITIKELQDIISSNCKIVFESKM
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCC
>Mature Secondary Structure
MEFFNFHTHQFTNQSNILELVNQYPQEFDESIPFYSIGIHPWYIKEDQIDLELKIIEDKL
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCEEEEEEHHHH
QAENCLAVGECGLDKRIEIPLEQQIIVFEKQLALAEKYKKPVVIHCVAAFQEIKAIKKKL
HHCCCEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHH
KISVPMIIHGFSKNKQLAEQLIKDGFYLSFGKYLLKNPDLKIVFESVPNDRFFLETDTIE
CCCCCCEEECCCCCHHHHHHHHHCCEEEHHHHHHHCCCCEEEEEECCCCCEEEEECCHHH
EDIQQVYNIASEYKNITIKELQDIISSNCKIVFESKM
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]