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The map label for this gene is yliC [C]

Identifier: 145300002

GI number: 145300002

Start: 3346618

End: 3347592

Strand: Direct

Name: yliC [C]

Synonym: ASA_3101

Alternate gene names: 145300002

Gene position: 3346618-3347592 (Clockwise)

Preceding gene: 145300001

Following gene: 145300003

Centisome position: 71.17

GC content: 59.9

Gene sequence:

>975_bases
ATGGGATTTATACTGAGACGTTTCTCCTTCTATCTGGTCGCCTTTCTGGTGGCCGCCACCATCAACTTCCTGCTACCCAG
AGCCATGCCGGGGGATCCTGTCTCCGTCATGTTTGCCCGGGCTGGCGCCATAATGGAACCCGCCGCGCTGGAGGCCCTCA
AGGCCACCTTCGGTTTCGTGGACGGCCCCATAAGCACCCAATTTCTCACCTATGTGAAGAGTGTCTTCACCTGGGATCTC
GGCACCTCGGTGCGCTACTACCCCCAACCTGTGGCCGACGTACTCGGACGCGCCATCGGCTGGACCCTGTTCCTGGTAGG
TACCTCCACCATACTGAGTTTCTCCGTCGGATCCATCGTCGGCATCTTCGCCGCCTGGCACCGGGGGGGACGCATGGACA
GCATACTCTCCCCGCTCACTCTGGTGATGCAGGCCATTCCGCCCGTGGTCATCTCGCTGCTCGCCCTCTTCCTATTCGGG
GTCAGTCTGGAGTGGCTGCCCATCGGCTATGCCTACAGCCCGGAGATCACCGCCGATTTCGGCTGGGAACACATCAAGAG
CATCATGCTGCACGCCGTCATGCCGGTGCTGACGCTGGCCATGGTGCAGGTGGGGGGCTTCCTCATCACCATGCGCAACA
ACATGATCAACCTGGATTACATCACCATGGCCAAGGCCAAGGGGCTCTCCAGCAACAGAGTCATCTTCAACTACGGTGCC
CGCAACGCCATACTGCCGAGCGTCACCGCGCTCTCCATGGCGCTCGGTTTCGTCATCGGCGGCTCCCTCATCACAGAGGT
GATCTTCAACTACCCGGGGCTGGGTCTGACTCTCTATCAGGGCATTCTGGCCCGTGACTACCCGCTCATTCAGGGGCAGC
TGCTCATCATGACCATCACCATGCTCAGCTTCAACTTCCTGGCCGACGTGCTCTACGTCTTCCTGGATCCCCGTCTGCGT
ACAGGAGGCAAATAA

Upstream 100 bases:

>100_bases
CGGGGGCCATTCTCCCCGCCATGTCTTCCATCCCCCTGATTGTTCGGGGTTGGGGGAGCTTTGCCCGGCGCGGGGCAGGC
TTGCAGTAAAAGGGTTCACC

Downstream 100 bases:

>100_bases
GATGCGTATGCCGACTATTTTGAAAATCCTGCTGGGCAACAAGAAAGCCGCCTTCGGCCTCTTCATCGTGGTCAGCTTCG
TGCTGATGGCACTGTTCGCC

Product: ABC-type oligopeptide transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MGFILRRFSFYLVAFLVAATINFLLPRAMPGDPVSVMFARAGAIMEPAALEALKATFGFVDGPISTQFLTYVKSVFTWDL
GTSVRYYPQPVADVLGRAIGWTLFLVGTSTILSFSVGSIVGIFAAWHRGGRMDSILSPLTLVMQAIPPVVISLLALFLFG
VSLEWLPIGYAYSPEITADFGWEHIKSIMLHAVMPVLTLAMVQVGGFLITMRNNMINLDYITMAKAKGLSSNRVIFNYGA
RNAILPSVTALSMALGFVIGGSLITEVIFNYPGLGLTLYQGILARDYPLIQGQLLIMTITMLSFNFLADVLYVFLDPRLR
TGGK

Sequences:

>Translated_324_residues
MGFILRRFSFYLVAFLVAATINFLLPRAMPGDPVSVMFARAGAIMEPAALEALKATFGFVDGPISTQFLTYVKSVFTWDL
GTSVRYYPQPVADVLGRAIGWTLFLVGTSTILSFSVGSIVGIFAAWHRGGRMDSILSPLTLVMQAIPPVVISLLALFLFG
VSLEWLPIGYAYSPEITADFGWEHIKSIMLHAVMPVLTLAMVQVGGFLITMRNNMINLDYITMAKAKGLSSNRVIFNYGA
RNAILPSVTALSMALGFVIGGSLITEVIFNYPGLGLTLYQGILARDYPLIQGQLLIMTITMLSFNFLADVLYVFLDPRLR
TGGK
>Mature_323_residues
GFILRRFSFYLVAFLVAATINFLLPRAMPGDPVSVMFARAGAIMEPAALEALKATFGFVDGPISTQFLTYVKSVFTWDLG
TSVRYYPQPVADVLGRAIGWTLFLVGTSTILSFSVGSIVGIFAAWHRGGRMDSILSPLTLVMQAIPPVVISLLALFLFGV
SLEWLPIGYAYSPEITADFGWEHIKSIMLHAVMPVLTLAMVQVGGFLITMRNNMINLDYITMAKAKGLSSNRVIFNYGAR
NAILPSVTALSMALGFVIGGSLITEVIFNYPGLGLTLYQGILARDYPLIQGQLLIMTITMLSFNFLADVLYVFLDPRLRT
GGK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=323, Percent_Identity=29.1021671826625, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=30.2670623145401, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789888, Length=322, Percent_Identity=29.8136645962733, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=26.9349845201238, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787761, Length=338, Percent_Identity=29.8816568047337, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=23.4159779614325, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787550, Length=266, Percent_Identity=25.187969924812, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35406; Mature: 35274

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFILRRFSFYLVAFLVAATINFLLPRAMPGDPVSVMFARAGAIMEPAALEALKATFGFV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCC
DGPISTQFLTYVKSVFTWDLGTSVRYYPQPVADVLGRAIGWTLFLVGTSTILSFSVGSIV
CCCHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFAAWHRGGRMDSILSPLTLVMQAIPPVVISLLALFLFGVSLEWLPIGYAYSPEITADF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEECCCCCCCC
GWEHIKSIMLHAVMPVLTLAMVQVGGFLITMRNNMINLDYITMAKAKGLSSNRVIFNYGA
CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEHEEEHHHHCCCCCCCEEEECCC
RNAILPSVTALSMALGFVIGGSLITEVIFNYPGLGLTLYQGILARDYPLIQGQLLIMTIT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHCCHHHHHHHH
MLSFNFLADVLYVFLDPRLRTGGK
HHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GFILRRFSFYLVAFLVAATINFLLPRAMPGDPVSVMFARAGAIMEPAALEALKATFGFV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCC
DGPISTQFLTYVKSVFTWDLGTSVRYYPQPVADVLGRAIGWTLFLVGTSTILSFSVGSIV
CCCHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFAAWHRGGRMDSILSPLTLVMQAIPPVVISLLALFLFGVSLEWLPIGYAYSPEITADF
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEECCCCCCCC
GWEHIKSIMLHAVMPVLTLAMVQVGGFLITMRNNMINLDYITMAKAKGLSSNRVIFNYGA
CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEHEEEHHHHCCCCCCCEEEECCC
RNAILPSVTALSMALGFVIGGSLITEVIFNYPGLGLTLYQGILARDYPLIQGQLLIMTIT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHCCHHHHHHHH
MLSFNFLADVLYVFLDPRLRTGGK
HHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA