Definition | Corynebacterium glutamicum R chromosome, complete genome. |
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Accession | NC_009342 |
Length | 3,314,179 |
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The map label for this gene is tag [H]
Identifier: 145294268
GI number: 145294268
Start: 241821
End: 242378
Strand: Direct
Name: tag [H]
Synonym: cgR_0224
Alternate gene names: 145294268
Gene position: 241821-242378 (Clockwise)
Preceding gene: 145294267
Following gene: 145294269
Centisome position: 7.3
GC content: 48.75
Gene sequence:
>558_bases ATGTCCCATGCTCAAATTATGGTTCGCACCATGACAACAAACAAAGCTAATCCAAATGAACTTGTAATCTGCGCTGATGA AAAGTCACGGCCCCGCTGGGCATCTAGAAGTGAGCTGTGTTGGGAGTATTTCGACAATGAGTGGGGCAGACCTCCGGTGG ATCTCAATACTCTTTTTGAGATCCTTACCCTGGTAGTTTTCCAAGTGGGTGTCACCTGGCATGCTGTGCTGTCCAAACGG GAAGGGTTCCGCAAAGCATTCGCCCAATTCGATGTCGCAAAAGTAGCCGCCTTCAATGAAAACGACGTGGAACGCCTACT TGATGATCTACAGATTTTTAGAAACCGAAGAAAAATCAACGCTGCCATCACCAACGCCAAAGCGCTGCTGGAGCTCACCG ATGAAACGGGAACCTTTGACTCAATTATTGCCGACCGCTCAACTGATGCCACAGCCATGGTGAAGCATCTTAAAGCTTTA GGTTTTACCCATATCGGACTGACCTCTTTGAGCATCCTCCAGCAGGCCATTGGGGTCACAGAGCTGAAAGCTGCCTAA
Upstream 100 bases:
>100_bases GGATGCGGGTTGAAAGAAGGGCGAATCAACATCACGATCCGCCAACTTGCACTATAAAACTACAGGTAGAGGTATGTCTC GGGGGTGAAATAGCCCCGCA
Downstream 100 bases:
>100_bases GATATAACTCCGATGACAACAGCACAGTTTCTAGCGCTTTTTCTGGTGTGGATCGCAGCAATTGCATCCCCCGGGCCAGA CCTTTTCCAGATCATCAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: 3-methyladenine-DNA glycosylase I, constitutive; TAG I; DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I [H]
Number of amino acids: Translated: 185; Mature: 184
Protein sequence:
>185_residues MSHAQIMVRTMTTNKANPNELVICADEKSRPRWASRSELCWEYFDNEWGRPPVDLNTLFEILTLVVFQVGVTWHAVLSKR EGFRKAFAQFDVAKVAAFNENDVERLLDDLQIFRNRRKINAAITNAKALLELTDETGTFDSIIADRSTDATAMVKHLKAL GFTHIGLTSLSILQQAIGVTELKAA
Sequences:
>Translated_185_residues MSHAQIMVRTMTTNKANPNELVICADEKSRPRWASRSELCWEYFDNEWGRPPVDLNTLFEILTLVVFQVGVTWHAVLSKR EGFRKAFAQFDVAKVAAFNENDVERLLDDLQIFRNRRKINAAITNAKALLELTDETGTFDSIIADRSTDATAMVKHLKAL GFTHIGLTSLSILQQAIGVTELKAA >Mature_184_residues SHAQIMVRTMTTNKANPNELVICADEKSRPRWASRSELCWEYFDNEWGRPPVDLNTLFEILTLVVFQVGVTWHAVLSKRE GFRKAFAQFDVAKVAAFNENDVERLLDDLQIFRNRRKINAAITNAKALLELTDETGTFDSIIADRSTDATAMVKHLKALG FTHIGLTSLSILQQAIGVTELKAA
Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions [H]
COG id: COG2818
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789971, Length=169, Percent_Identity=38.4615384615385, Blast_Score=109, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005019 - InterPro: IPR011257 - InterPro: IPR004597 [H]
Pfam domain/function: PF03352 Adenine_glyco [H]
EC number: =3.2.2.20 [H]
Molecular weight: Translated: 20823; Mature: 20692
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHAQIMVRTMTTNKANPNELVICADEKSRPRWASRSELCWEYFDNEWGRPPVDLNTLFE CCCHHEEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH ILTLVVFQVGVTWHAVLSKREGFRKAFAQFDVAKVAAFNENDVERLLDDLQIFRNRRKIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH AAITNAKALLELTDETGTFDSIIADRSTDATAMVKHLKALGFTHIGLTSLSILQQAIGVT HHHHHHHHHEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHH ELKAA HHCCC >Mature Secondary Structure SHAQIMVRTMTTNKANPNELVICADEKSRPRWASRSELCWEYFDNEWGRPPVDLNTLFE CCHHEEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH ILTLVVFQVGVTWHAVLSKREGFRKAFAQFDVAKVAAFNENDVERLLDDLQIFRNRRKIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH AAITNAKALLELTDETGTFDSIIADRSTDATAMVKHLKALGFTHIGLTSLSILQQAIGVT HHHHHHHHHEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHH ELKAA HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3536912; 3520491; 8041620; 9278503 [H]