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The map label for this gene is sufD [H]

Identifier: 138896582

GI number: 138896582

Start: 3045834

End: 3047147

Strand: Reverse

Name: sufD [H]

Synonym: GTNG_2945

Alternate gene names: 138896582

Gene position: 3047147-3045834 (Counterclockwise)

Preceding gene: 138896583

Following gene: 138896581

Centisome position: 85.83

GC content: 52.36

Gene sequence:

>1314_bases
ATGGCGACAGAAACGAAAATTCCATTCGATGAAACATACATCCGCACGTTCTCAAGCGAACGCGGCGAACCGGACTGGCT
GACCGAGCGACGCCTCGAAGCGCTCGGGAAAGCGGAACAGCTGCCGCTGCCGAAACCGGACAAAACGAAAATTGACAAGT
GGAACTTTACTGACTTTGGCCGCCATGTGGTCGACAGCGCACCGTATGCGAACCTTGATGATTTGCCGGAGGCGGTCAAG
GCGCTGATTGAAGCGGGCGAAGGAACGACAAATTTATATGTGCAGCGCAACCATACACCAGCGTATGTTTCGCTCTCTGA
TGAGTTGAAAGAAAAAGGAGTCATCTTCACCGATATTTTCACGGCTGCTAGGGAACATGGCGATTTGCTGAAGAAATATT
TCATGACCGATGCGGTTAAGCCAGATGAGCACCGTCTTGCCGCGCTGCATGCGGCGCTGTTAAACGGCGGGGTGTTTGTG
TACGTTCCGAAAAACGTCGAAATCGAAACACCGCTCCAAGCCGTCTACATTCAAGACGAGGACGACATCGGCTTGTTTAA
CCACGTCATCGTTGTCGCAGAAGACAACAGCCGCGTCGTATTCGTTGAAAACTATTTATCGGCGAGCGATGAAGGAAAAG
CGGTCGTCAATATTGTCGCCGAGGTATTTGCCAATGCGAACGCGCGCGTCTTTTTCGCCGCGGTCGACCATTTGGCCAAA
GGCGTGACGACGTATGTCAACCGGCGCGGCGTTGCTGGGCGCGACGGGCGAATCGAATGGGCGCTCGGGCTGATGAATGA
CGGCAACACCGTGTCGGAAAATATCACTCGCCTCATCGGTGACGGATCGTTCGGGGATACGAAAACGGTTGTCGTCAGCC
GCGGCGAGCAAGTGCAAAACTTTACGACAAGCGTCGTTCACTACGGGAAACATACGGAAGGTTATATTTTAAAACACGGC
GTCGTCCGTGACAGCGCCACTTCGATTTTTAACGGCATCGGCAAAATTGAGCACGGCGCGTCGAAGTCCAACGCCGAGCA
AGAATCGCGCGTGTTGATGTTAAGCGAAAAAGCGCGCGGCGATGCGAACCCGATTTTGCTCATTGATGAAGATGATGTCA
TGGCAGGCCACGCGGCATCAGTCGGGCGCGTCGATCCTATTCAATTGTATTACTTAATGAGCCGCGGCATTCCGAGAAAC
GAAGCTGAACGGCTGATCATCCATGGCTTTTTGGCGCCAGTCGTTGAAGCGATTCCGCTTGAAGGTGTGAAAAAACAATT
AATCGAAGTGATTGAAAGGAAAGTTCAATCATGA

Upstream 100 bases:

>100_bases
CACAGCGGCTTGAGGCGGAAGGGTACGATTGGATTAAGAAAGAATTGGGCATCGAAGACGAAACGGTCGGGCAAGAAGCG
TAAGCGTTAGGAGGAGGACT

Downstream 100 bases:

>100_bases
ACGTGAAAGAAATTCGTTCGTTGTTTCCCATTTTGCATCAACAAGTGAACGGCCATCCGCTCATTTATTTTGATAGTGCG
GCGACATCGCAAAAACCGCT

Product: ABC transporter associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MATETKIPFDETYIRTFSSERGEPDWLTERRLEALGKAEQLPLPKPDKTKIDKWNFTDFGRHVVDSAPYANLDDLPEAVK
ALIEAGEGTTNLYVQRNHTPAYVSLSDELKEKGVIFTDIFTAAREHGDLLKKYFMTDAVKPDEHRLAALHAALLNGGVFV
YVPKNVEIETPLQAVYIQDEDDIGLFNHVIVVAEDNSRVVFVENYLSASDEGKAVVNIVAEVFANANARVFFAAVDHLAK
GVTTYVNRRGVAGRDGRIEWALGLMNDGNTVSENITRLIGDGSFGDTKTVVVSRGEQVQNFTTSVVHYGKHTEGYILKHG
VVRDSATSIFNGIGKIEHGASKSNAEQESRVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPRN
EAERLIIHGFLAPVVEAIPLEGVKKQLIEVIERKVQS

Sequences:

>Translated_437_residues
MATETKIPFDETYIRTFSSERGEPDWLTERRLEALGKAEQLPLPKPDKTKIDKWNFTDFGRHVVDSAPYANLDDLPEAVK
ALIEAGEGTTNLYVQRNHTPAYVSLSDELKEKGVIFTDIFTAAREHGDLLKKYFMTDAVKPDEHRLAALHAALLNGGVFV
YVPKNVEIETPLQAVYIQDEDDIGLFNHVIVVAEDNSRVVFVENYLSASDEGKAVVNIVAEVFANANARVFFAAVDHLAK
GVTTYVNRRGVAGRDGRIEWALGLMNDGNTVSENITRLIGDGSFGDTKTVVVSRGEQVQNFTTSVVHYGKHTEGYILKHG
VVRDSATSIFNGIGKIEHGASKSNAEQESRVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPRN
EAERLIIHGFLAPVVEAIPLEGVKKQLIEVIERKVQS
>Mature_436_residues
ATETKIPFDETYIRTFSSERGEPDWLTERRLEALGKAEQLPLPKPDKTKIDKWNFTDFGRHVVDSAPYANLDDLPEAVKA
LIEAGEGTTNLYVQRNHTPAYVSLSDELKEKGVIFTDIFTAAREHGDLLKKYFMTDAVKPDEHRLAALHAALLNGGVFVY
VPKNVEIETPLQAVYIQDEDDIGLFNHVIVVAEDNSRVVFVENYLSASDEGKAVVNIVAEVFANANARVFFAAVDHLAKG
VTTYVNRRGVAGRDGRIEWALGLMNDGNTVSENITRLIGDGSFGDTKTVVVSRGEQVQNFTTSVVHYGKHTEGYILKHGV
VRDSATSIFNGIGKIEHGASKSNAEQESRVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPRNE
AERLIIHGFLAPVVEAIPLEGVKKQLIEVIERKVQS

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=445, Percent_Identity=24.7191011235955, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1787971, Length=142, Percent_Identity=32.3943661971831, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 48270; Mature: 48139

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATETKIPFDETYIRTFSSERGEPDWLTERRLEALGKAEQLPLPKPDKTKIDKWNFTDFG
CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHH
RHVVDSAPYANLDDLPEAVKALIEAGEGTTNLYVQRNHTPAYVSLSDELKEKGVIFTDIF
HHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECHHHHHCCCEEEHHH
TAAREHGDLLKKYFMTDAVKPDEHRLAALHAALLNGGVFVYVPKNVEIETPLQAVYIQDE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEECCCEEEEEEECC
DDIGLFNHVIVVAEDNSRVVFVENYLSASDEGKAVVNIVAEVFANANARVFFAAVDHLAK
CCCCEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHH
GVTTYVNRRGVAGRDGRIEWALGLMNDGNTVSENITRLIGDGSFGDTKTVVVSRGEQVQN
HHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
FTTSVVHYGKHTEGYILKHGVVRDSATSIFNGIGKIEHGASKSNAEQESRVLMLSEKARG
HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCEEEEEECCCCC
DANPILLIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPRNEAERLIIHGFLAPVVEAIPL
CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCH
EGVKKQLIEVIERKVQS
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATETKIPFDETYIRTFSSERGEPDWLTERRLEALGKAEQLPLPKPDKTKIDKWNFTDFG
CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHH
RHVVDSAPYANLDDLPEAVKALIEAGEGTTNLYVQRNHTPAYVSLSDELKEKGVIFTDIF
HHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECHHHHHCCCEEEHHH
TAAREHGDLLKKYFMTDAVKPDEHRLAALHAALLNGGVFVYVPKNVEIETPLQAVYIQDE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEECCCEEEEEEECC
DDIGLFNHVIVVAEDNSRVVFVENYLSASDEGKAVVNIVAEVFANANARVFFAAVDHLAK
CCCCEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHH
GVTTYVNRRGVAGRDGRIEWALGLMNDGNTVSENITRLIGDGSFGDTKTVVVSRGEQVQN
HHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
FTTSVVHYGKHTEGYILKHGVVRDSATSIFNGIGKIEHGASKSNAEQESRVLMLSEKARG
HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCEEEEEECCCCC
DANPILLIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPRNEAERLIIHGFLAPVVEAIPL
CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCH
EGVKKQLIEVIERKVQS
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]