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The map label for this gene is rbsB [H]

Identifier: 138895465

GI number: 138895465

Start: 1924292

End: 1925248

Strand: Reverse

Name: rbsB [H]

Synonym: GTNG_1813

Alternate gene names: 138895465

Gene position: 1925248-1924292 (Counterclockwise)

Preceding gene: 138895466

Following gene: 138895464

Centisome position: 54.23

GC content: 45.35

Gene sequence:

>957_bases
ATGATAAAAAAGAAAACAAAGTTGTTCAGCACAGCAGTTGTCTTAACTTGTATGGCTCTTTTGGCCGGGTGCGGTGGTTC
TAAAGGGGCAAGCGGGGGCGGAGGCGAGGAACGAGTCGCGGTTGTTTTGAAAACGTTATCTAGCCCTTACTGGAAATATG
TCGAGGCTGGAGCAAAGGCTGCAGGTAAAGAACTTGGTGTGGATGTGACTGTTGTCGGGCCAAATGCAGAGTCCGAAGTG
ATGCAGCAAATCAACATGATCGAAGATCAATTGAACCAGTCACCCGGTGCGCTTGTCGTCTCTCCGTCGCAACCGGATAC
AGTAGTGCCTGTATTAGAAACTGCGACTGTTCCAGTTCTTCTTATAGATACGGATGCCAAGCTCAAAAATAAAACAAGCT
TTATTGGTACTGAAAACTATGAGGCAGGGTATGAAGGCGGGAAGTTACTCTCTTCGCTGCTTCAAAAAGGAGATAAAGTA
GCGATCATTTCAGGTGCCCTCGGAAATACAGCGACGGATGAACGTGTGAAAGGAGCCAAAGCCGCTCTCGAAGAGGCAGG
GATGGTGATTGTTGCTGAGCAACCTGCTGATAGTGATAAAACAAAAGCGATGTCTGTCATGGAAAATATCCTGCAAAAAA
ATAACGATGTAAAAGGTGTATTCGCTGCAAATGACGATATGGCCCTTGGGGTTTTACGTGCAGTTGAAGCGAAAGGGCTA
GACGTTAAAGTGATTGGTACAGACGGGACTTTAGAGGCAGTGGAATCGATTTTGGATGGAAAACTGGCCGGTACGATTGC
GCAAAACCCGTATAAGATGGGATATGAAGGCGTGAAAAATGCACTAGCCGCTATTAATGGCGAAAAAGTTGACAAACGTA
TCAATAGCGGTGTTGAAGTGATCACGAAAGACAACGCTCAAGAGAAATTAGAATTTCTCAAAACGATATCAAAATAG

Upstream 100 bases:

>100_bases
CCGCTGTATTTGTAGATGTTCTTCGACAACGGAAGAGCAAAAAGGCTTAAATACCATTTTCGCTAGGGCAAAAAAATGGA
AAATGAGGAGGTTTTATTTT

Downstream 100 bases:

>100_bases
GTATATTTGGAAGGGAAAGGATTATCTAAGGGGTTTGAACATATTATGAGACCTACTATTTACGATGTAGCTGAACGAGC
AGGTGTATCGATAGCGACCG

Product: D-ribose-binding periplasmic protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MIKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAAGKELGVDVTVVGPNAESEV
MQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETATVPVLLIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKV
AIISGALGNTATDERVKGAKAALEEAGMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMALGVLRAVEAKGL
DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEKVDKRINSGVEVITKDNAQEKLEFLKTISK

Sequences:

>Translated_318_residues
MIKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAAGKELGVDVTVVGPNAESEV
MQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETATVPVLLIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKV
AIISGALGNTATDERVKGAKAALEEAGMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMALGVLRAVEAKGL
DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEKVDKRINSGVEVITKDNAQEKLEFLKTISK
>Mature_318_residues
MIKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAAGKELGVDVTVVGPNAESEV
MQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETATVPVLLIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKV
AIISGALGNTATDERVKGAKAALEEAGMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMALGVLRAVEAKGL
DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEKVDKRINSGVEVITKDNAQEKLEFLKTISK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=254, Percent_Identity=35.8267716535433, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1790192, Length=272, Percent_Identity=32.3529411764706, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1787795, Length=218, Percent_Identity=32.5688073394495, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790674, Length=237, Percent_Identity=25.7383966244726, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33201; Mature: 33201

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AGKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETATVPVL
CCHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCEEEE
LIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKVAIISGALGNTATDERVKGAK
EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHH
AALEEAGMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMALGVLRAVEAKGL
HHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCC
DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEKVDKRINSGVEV
EEEEEECCCHHHHHHHHHCCHHHHHHHCCCHHCCHHHHHHHHHHCCCHHHHHHHCCCCEE
ITKDNAQEKLEFLKTISK
EECCCHHHHHHHHHHHCC
>Mature Secondary Structure
MIKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AGKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETATVPVL
CCHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCEEEE
LIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKVAIISGALGNTATDERVKGAK
EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHH
AALEEAGMVIVAEQPADSDKTKAMSVMENILQKNNDVKGVFAANDDMALGVLRAVEAKGL
HHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCC
DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEKVDKRINSGVEV
EEEEEECCCHHHHHHHHHCCHHHHHHHCCCHHCCHHHHHHHHHHCCCHHHHHHHCCCCEE
ITKDNAQEKLEFLKTISK
EECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]